Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3749 and Atu3750 overlap by 4 nucleotides Atu3750 and Atu3751 are separated by 104 nucleotides Atu3751 and Atu3752 are separated by 102 nucleotides
Atu3749: Atu3749 - enhanced entry protein, at 833,035 to 834,147
Atu3749
Atu3750: Atu3750 - thiamine-phosphate pyrophosphorylase, at 834,144 to 834,797
Atu3750
Atu3751: Atu3751 - hypothetical protein, at 834,902 to 835,666
Atu3751
Atu3752: Atu3752 - hypothetical protein, at 835,769 to 835,945
Atu3752
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 834.206 kb on - strand at 834.222 kb on + strand, within Atu3750 at 834.285 kb on + strand, within Atu3750 at 834.503 kb on - strand, within Atu3750 at 834.536 kb on + strand, within Atu3750 at 834.550 kb on + strand, within Atu3750 at 834.563 kb on - strand, within Atu3750 at 834.764 kb on + strand at 834.767 kb on - strand at 834.788 kb on - strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.897 kb on + strand at 834.905 kb on - strand at 834.905 kb on - strand at 835.031 kb on + strand, within Atu3751 at 835.031 kb on + strand, within Atu3751 at 835.108 kb on - strand, within Atu3751 at 835.282 kb on - strand, within Atu3751 at 835.323 kb on + strand, within Atu3751 at 835.323 kb on + strand, within Atu3751 at 835.331 kb on - strand, within Atu3751 at 835.331 kb on - strand, within Atu3751 at 835.396 kb on + strand, within Atu3751 at 835.422 kb on - strand, within Atu3751 at 835.466 kb on - strand, within Atu3751 at 835.500 kb on + strand, within Atu3751 at 835.515 kb on - strand, within Atu3751 at 835.542 kb on + strand, within Atu3751 at 835.560 kb on + strand, within Atu3751 at 835.568 kb on - strand, within Atu3751 at 835.622 kb on - strand at 835.695 kb on + strand at 835.703 kb on - strand at 835.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 834,206 - -1.6 834,222 + Atu3750 0.12 -1.0 834,285 + Atu3750 0.22 +0.3 834,503 - Atu3750 0.55 -0.0 834,536 + Atu3750 0.60 -2.2 834,550 + Atu3750 0.62 -0.3 834,563 - Atu3750 0.64 -1.0 834,764 + +2.1 834,767 - -0.1 834,788 - -2.1 834,892 + +0.3 834,892 + -0.0 834,892 + -0.5 834,892 + +0.3 834,897 + -0.5 834,905 - -0.3 834,905 - +1.3 835,031 + Atu3751 0.17 +0.5 835,031 + Atu3751 0.17 +1.5 835,108 - Atu3751 0.27 +0.5 835,282 - Atu3751 0.50 -0.6 835,323 + Atu3751 0.55 +0.3 835,323 + Atu3751 0.55 -0.7 835,331 - Atu3751 0.56 -0.2 835,331 - Atu3751 0.56 -0.8 835,396 + Atu3751 0.65 -0.9 835,422 - Atu3751 0.68 -3.3 835,466 - Atu3751 0.74 -0.5 835,500 + Atu3751 0.78 +1.2 835,515 - Atu3751 0.80 -1.7 835,542 + Atu3751 0.84 +0.0 835,560 + Atu3751 0.86 +1.3 835,568 - Atu3751 0.87 +0.5 835,622 - -0.4 835,695 + +0.3 835,703 - +2.1 835,786 + +0.7
Or see this region's nucleotide sequence