Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3703 and Atu3704 are separated by 252 nucleotides Atu3704 and Atu3705 are separated by 438 nucleotides
Atu3703: Atu3703 - tRNA-specific 2-thiouridylase MnmA, at 781,025 to 782,167
Atu3703
Atu3704: Atu3704 - hypothetical protein, at 782,420 to 783,610
Atu3704
Atu3705: Atu3705 - hypothetical protein, at 784,049 to 784,696
Atu3705
Position (kb) 782
783
784 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 782.239 kb on + strand at 782.258 kb on - strand at 782.323 kb on + strand at 782.331 kb on - strand at 782.416 kb on + strand at 782.521 kb on + strand at 782.531 kb on - strand at 782.542 kb on + strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.598 kb on + strand, within Atu3704 at 782.723 kb on + strand, within Atu3704 at 782.758 kb on + strand, within Atu3704 at 782.842 kb on - strand, within Atu3704 at 782.854 kb on - strand, within Atu3704 at 782.870 kb on + strand, within Atu3704 at 782.870 kb on + strand, within Atu3704 at 782.878 kb on - strand, within Atu3704 at 782.955 kb on + strand, within Atu3704 at 782.955 kb on + strand, within Atu3704 at 782.963 kb on - strand, within Atu3704 at 782.998 kb on + strand, within Atu3704 at 783.012 kb on + strand, within Atu3704 at 783.041 kb on - strand, within Atu3704 at 783.055 kb on + strand, within Atu3704 at 783.126 kb on + strand, within Atu3704 at 783.377 kb on + strand, within Atu3704 at 783.556 kb on + strand at 783.717 kb on - strand at 783.737 kb on - strand at 783.868 kb on + strand at 783.868 kb on + strand at 784.012 kb on - strand at 784.205 kb on - strand, within Atu3705 at 784.333 kb on + strand, within Atu3705 at 784.379 kb on - strand, within Atu3705 at 784.484 kb on - strand, within Atu3705 at 784.529 kb on + strand, within Atu3705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 782,239 + -0.3 782,258 - +0.7 782,323 + -2.4 782,331 - -0.1 782,416 + -0.2 782,521 + +0.6 782,531 - -0.1 782,542 + Atu3704 0.10 -0.1 782,550 - Atu3704 0.11 -1.0 782,550 - Atu3704 0.11 +0.1 782,550 - Atu3704 0.11 +3.4 782,598 + Atu3704 0.15 +0.5 782,723 + Atu3704 0.25 -0.1 782,758 + Atu3704 0.28 +1.3 782,842 - Atu3704 0.35 -0.1 782,854 - Atu3704 0.36 -0.5 782,870 + Atu3704 0.38 -2.3 782,870 + Atu3704 0.38 -1.4 782,878 - Atu3704 0.38 +1.2 782,955 + Atu3704 0.45 -0.5 782,955 + Atu3704 0.45 -1.7 782,963 - Atu3704 0.46 +0.7 782,998 + Atu3704 0.49 -0.5 783,012 + Atu3704 0.50 +0.5 783,041 - Atu3704 0.52 -0.9 783,055 + Atu3704 0.53 +1.3 783,126 + Atu3704 0.59 +1.7 783,377 + Atu3704 0.80 -1.2 783,556 + -0.7 783,717 - -0.3 783,737 - +0.3 783,868 + -0.7 783,868 + -1.2 784,012 - -0.8 784,205 - Atu3705 0.24 -0.0 784,333 + Atu3705 0.44 +0.7 784,379 - Atu3705 0.51 -1.9 784,484 - Atu3705 0.67 +1.0 784,529 + Atu3705 0.74 +2.6
Or see this region's nucleotide sequence