Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3474 and Atu3475 are separated by 11 nucleotides Atu3475 and Atu3476 are separated by 108 nucleotides Atu3476 and Atu3477 are separated by 79 nucleotides
Atu3474: Atu3474 - acyl-CoA dehydrogenase, at 521,485 to 522,612
Atu3474
Atu3475: Atu3475 - acetyl-CoA C-acetyltransferase, at 522,624 to 523,862
Atu3475
Atu3476: Atu3476 - AsnC family transcriptional regulator, at 523,971 to 524,444
Atu3476
Atu3477: Atu3477 - acyl-CoA dehydrogenase, at 524,524 to 525,696
Atu3477
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 521.694 kb on - strand, within Atu3474 at 521.699 kb on - strand, within Atu3474 at 521.746 kb on - strand, within Atu3474 at 521.803 kb on + strand, within Atu3474 at 521.838 kb on - strand, within Atu3474 at 521.848 kb on - strand, within Atu3474 at 521.929 kb on - strand, within Atu3474 at 521.946 kb on + strand, within Atu3474 at 521.954 kb on - strand, within Atu3474 at 522.029 kb on + strand, within Atu3474 at 522.034 kb on - strand, within Atu3474 at 522.146 kb on - strand, within Atu3474 at 522.156 kb on + strand, within Atu3474 at 522.164 kb on - strand, within Atu3474 at 522.174 kb on - strand, within Atu3474 at 522.174 kb on - strand, within Atu3474 at 522.193 kb on - strand, within Atu3474 at 522.203 kb on + strand, within Atu3474 at 522.210 kb on - strand, within Atu3474 at 522.244 kb on - strand, within Atu3474 at 522.622 kb on + strand at 522.630 kb on - strand at 522.710 kb on - strand at 522.942 kb on + strand, within Atu3475 at 522.942 kb on + strand, within Atu3475 at 523.113 kb on - strand, within Atu3475 at 523.113 kb on - strand, within Atu3475 at 523.202 kb on + strand, within Atu3475 at 523.233 kb on + strand, within Atu3475 at 523.236 kb on - strand, within Atu3475 at 523.241 kb on - strand, within Atu3475 at 523.248 kb on + strand, within Atu3475 at 523.290 kb on - strand, within Atu3475 at 523.349 kb on + strand, within Atu3475 at 523.474 kb on + strand, within Atu3475 at 523.486 kb on - strand, within Atu3475 at 523.603 kb on + strand, within Atu3475 at 523.781 kb on - strand at 523.783 kb on + strand at 523.842 kb on + strand at 523.842 kb on + strand at 523.842 kb on + strand at 523.850 kb on - strand at 523.850 kb on - strand at 523.850 kb on - strand at 524.068 kb on + strand, within Atu3476 at 524.072 kb on - strand, within Atu3476 at 524.076 kb on - strand, within Atu3476 at 524.114 kb on - strand, within Atu3476 at 524.123 kb on + strand, within Atu3476 at 524.201 kb on + strand, within Atu3476 at 524.268 kb on - strand, within Atu3476 at 524.273 kb on - strand, within Atu3476 at 524.458 kb on + strand at 524.536 kb on - strand at 524.690 kb on - strand, within Atu3477 at 524.710 kb on - strand, within Atu3477 at 524.721 kb on + strand, within Atu3477 at 524.739 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.831 kb on - strand, within Atu3477
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 521,694 - Atu3474 0.19 +0.2 521,699 - Atu3474 0.19 -1.5 521,746 - Atu3474 0.23 -0.5 521,803 + Atu3474 0.28 +0.7 521,838 - Atu3474 0.31 -1.3 521,848 - Atu3474 0.32 -0.1 521,929 - Atu3474 0.39 -0.7 521,946 + Atu3474 0.41 -0.5 521,954 - Atu3474 0.42 -2.8 522,029 + Atu3474 0.48 -0.8 522,034 - Atu3474 0.49 -3.3 522,146 - Atu3474 0.59 -0.2 522,156 + Atu3474 0.59 -0.9 522,164 - Atu3474 0.60 +4.9 522,174 - Atu3474 0.61 -0.3 522,174 - Atu3474 0.61 -0.2 522,193 - Atu3474 0.63 -0.4 522,203 + Atu3474 0.64 +0.4 522,210 - Atu3474 0.64 -2.1 522,244 - Atu3474 0.67 -0.9 522,622 + -1.2 522,630 - -0.3 522,710 - -1.4 522,942 + Atu3475 0.26 -2.3 522,942 + Atu3475 0.26 +2.3 523,113 - Atu3475 0.39 -2.6 523,113 - Atu3475 0.39 +0.6 523,202 + Atu3475 0.47 -1.2 523,233 + Atu3475 0.49 +0.1 523,236 - Atu3475 0.49 -0.1 523,241 - Atu3475 0.50 -0.5 523,248 + Atu3475 0.50 -1.1 523,290 - Atu3475 0.54 +0.1 523,349 + Atu3475 0.59 +0.3 523,474 + Atu3475 0.69 -3.1 523,486 - Atu3475 0.70 -0.2 523,603 + Atu3475 0.79 -3.1 523,781 - -0.1 523,783 + +3.3 523,842 + -0.9 523,842 + -0.3 523,842 + -0.8 523,850 - +0.2 523,850 - +0.1 523,850 - -0.7 524,068 + Atu3476 0.20 +0.9 524,072 - Atu3476 0.21 -1.0 524,076 - Atu3476 0.22 +1.0 524,114 - Atu3476 0.30 -2.7 524,123 + Atu3476 0.32 -0.2 524,201 + Atu3476 0.49 -0.1 524,268 - Atu3476 0.63 -0.3 524,273 - Atu3476 0.64 -1.1 524,458 + -0.7 524,536 - +0.5 524,690 - Atu3477 0.14 +0.8 524,710 - Atu3477 0.16 +0.9 524,721 + Atu3477 0.17 -0.6 524,739 + Atu3477 0.18 -1.1 524,823 + Atu3477 0.25 +0.2 524,823 + Atu3477 0.25 +2.5 524,831 - Atu3477 0.26 -0.7 524,831 - Atu3477 0.26 -0.1
Or see this region's nucleotide sequence