Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3269 and Atu3270 are separated by 59 nucleotides Atu3270 and Atu3271 are separated by 136 nucleotides
Atu3269: Atu3269 - dipeptide ABC transporter substrate-binding protein, at 288,288 to 289,814
Atu3269
Atu3270: Atu3270 - hypothetical protein, at 289,874 to 290,116
Atu3270
Atu3271: Atu3271 - glycosyltransferase, at 290,253 to 291,377
Atu3271
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.935 kb on - strand, within Atu3269 at 288.969 kb on - strand, within Atu3269 at 289.038 kb on + strand, within Atu3269 at 289.180 kb on - strand, within Atu3269 at 289.233 kb on + strand, within Atu3269 at 289.259 kb on + strand, within Atu3269 at 289.376 kb on + strand, within Atu3269 at 289.379 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.437 kb on + strand, within Atu3269 at 289.549 kb on + strand, within Atu3269 at 289.549 kb on - strand, within Atu3269 at 289.626 kb on + strand, within Atu3269 at 289.635 kb on - strand, within Atu3269 at 289.750 kb on + strand at 289.762 kb on + strand at 289.998 kb on + strand, within Atu3270 at 290.006 kb on - strand, within Atu3270 at 290.017 kb on + strand, within Atu3270 at 290.211 kb on - strand at 290.356 kb on - strand at 290.361 kb on + strand at 290.490 kb on - strand, within Atu3271 at 290.520 kb on - strand, within Atu3271 at 290.557 kb on - strand, within Atu3271 at 290.694 kb on + strand, within Atu3271 at 290.698 kb on - strand, within Atu3271 at 290.809 kb on - strand, within Atu3271 at 290.943 kb on + strand, within Atu3271 at 291.022 kb on + strand, within Atu3271 at 291.048 kb on + strand, within Atu3271
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 288,935 - Atu3269 0.42 -0.0 288,969 - Atu3269 0.45 -0.5 289,038 + Atu3269 0.49 +0.9 289,180 - Atu3269 0.58 +0.8 289,233 + Atu3269 0.62 +0.5 289,259 + Atu3269 0.64 +0.1 289,376 + Atu3269 0.71 +0.2 289,379 - Atu3269 0.71 -2.7 289,384 - Atu3269 0.72 +1.6 289,384 - Atu3269 0.72 -1.2 289,384 - Atu3269 0.72 -2.4 289,384 - Atu3269 0.72 -0.8 289,384 - Atu3269 0.72 -1.8 289,437 + Atu3269 0.75 -0.7 289,549 + Atu3269 0.83 +1.2 289,549 - Atu3269 0.83 +2.0 289,626 + Atu3269 0.88 -0.9 289,635 - Atu3269 0.88 -0.1 289,750 + -1.8 289,762 + -1.1 289,998 + Atu3270 0.51 +0.9 290,006 - Atu3270 0.54 +0.4 290,017 + Atu3270 0.59 +0.4 290,211 - +1.4 290,356 - +1.4 290,361 + -0.4 290,490 - Atu3271 0.21 +1.5 290,520 - Atu3271 0.24 +2.3 290,557 - Atu3271 0.27 +0.8 290,694 + Atu3271 0.39 +0.6 290,698 - Atu3271 0.40 -1.8 290,809 - Atu3271 0.49 +0.4 290,943 + Atu3271 0.61 -0.9 291,022 + Atu3271 0.68 -1.0 291,048 + Atu3271 0.71 -0.9
Or see this region's nucleotide sequence