Strain Fitness in Agrobacterium fabrum C58 around Atu1434

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1432 and Atu1433 are separated by 12 nucleotidesAtu1433 and Atu1434 are separated by 60 nucleotidesAtu1434 and Atu1435 are separated by 97 nucleotidesAtu1435 and Atu1436 are separated by 103 nucleotides Atu1432: Atu1432 - dihydrolipoamide acetyltransferase, at 1,426,572 to 1,427,789 Atu1432 Atu1433: Atu1433 - arylesterase, at 1,427,802 to 1,428,446 Atu1433 Atu1434: Atu1434 - dihydrolipoamide dehydrogenase, at 1,428,507 to 1,429,952 Atu1434 Atu1435: Atu1435 - hypothetical protein, at 1,430,050 to 1,430,298 Atu1435 Atu1436: Atu1436 - lipoic Acid Synthetase, at 1,430,402 to 1,431,373 Atu1436 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -1 0 1at 1429.982 kb on - strandat 1430.065 kb on - strandat 1430.168 kb on + strand, within Atu1435at 1430.200 kb on + strand, within Atu1435at 1430.263 kb on - strand, within Atu1435

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,429,982 - -1.0
1,430,065 - -0.2
1,430,168 + Atu1435 0.47 +0.3
1,430,200 + Atu1435 0.60 -1.5
1,430,263 - Atu1435 0.86 -1.4

Or see this region's nucleotide sequence