Strain Fitness in Agrobacterium fabrum C58 around Atu1375

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1374 and Atu1375 are separated by 359 nucleotidesAtu1375 and Atu1376 are separated by 97 nucleotidesAtu1376 and Atu1377 are separated by 66 nucleotides Atu1374: Atu1374 - 30S ribosomal protein S2, at 1,368,005 to 1,368,772 Atu1374 Atu1375: Atu1375 - translation elongation factor Ts, at 1,369,132 to 1,370,058 Atu1375 Atu1376: Atu1376 - uridylate kinase, at 1,370,156 to 1,370,878 Atu1376 Atu1377: Atu1377 - ribosome recycling factor, at 1,370,945 to 1,371,502 Atu1377 Position (kb) 1369 1370 1371Strain fitness (log2 ratio) -1 0 1at 1370.150 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,370,150 + -0.6

Or see this region's nucleotide sequence