Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0689 and Atu0690 overlap by 20 nucleotides Atu0690 and Atu0691 are separated by 86 nucleotides Atu0691 and Atu8111 overlap by 45 nucleotides Atu8111 and Atu0692 overlap by 222 nucleotides
Atu0689: Atu0689 - ribosomal large subunit pseudouridine synthase B, at 685,132 to 687,141
Atu0689
Atu0690: Atu0690 - hypothetical protein, at 687,122 to 687,679
Atu0690
Atu0691: Atu0691 - hypothetical protein, at 687,766 to 688,692
Atu0691
Atu8111: Atu8111 - tRNA-Arg, at 688,648 to 688,961
Atu8111
Atu0692: Atu0692 - glutathione-regulated potassium-efflux system protein, at 688,740 to 690,572
Atu0692
Position (kb) 687
688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 686.786 kb on - strand, within Atu0689 at 686.843 kb on + strand, within Atu0689 at 686.917 kb on - strand, within Atu0689 at 686.931 kb on + strand, within Atu0689 at 686.939 kb on - strand, within Atu0689 at 686.939 kb on - strand, within Atu0689 at 687.107 kb on + strand at 687.150 kb on + strand at 687.158 kb on - strand at 687.368 kb on - strand, within Atu0690 at 687.498 kb on + strand, within Atu0690 at 687.600 kb on + strand, within Atu0690 at 687.604 kb on - strand, within Atu0690 at 687.674 kb on - strand at 687.756 kb on + strand at 687.854 kb on + strand at 687.943 kb on + strand, within Atu0691 at 687.951 kb on - strand, within Atu0691 at 687.979 kb on - strand, within Atu0691 at 687.984 kb on + strand, within Atu0691 at 688.104 kb on + strand, within Atu0691 at 688.128 kb on + strand, within Atu0691 at 688.133 kb on + strand, within Atu0691 at 688.136 kb on - strand, within Atu0691 at 688.236 kb on + strand, within Atu0691 at 688.256 kb on - strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.305 kb on + strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.313 kb on - strand, within Atu0691 at 688.470 kb on + strand, within Atu0691 at 688.473 kb on - strand, within Atu0691 at 688.562 kb on - strand, within Atu0691 at 688.587 kb on + strand, within Atu0691 at 688.646 kb on + strand at 688.687 kb on - strand at 688.818 kb on + strand at 688.849 kb on + strand at 688.857 kb on - strand at 688.857 kb on - strand at 688.884 kb on + strand at 688.976 kb on - strand, within Atu0692 at 689.138 kb on + strand, within Atu0692 at 689.171 kb on + strand, within Atu0692 at 689.183 kb on + strand, within Atu0692 at 689.269 kb on - strand, within Atu0692 at 689.321 kb on + strand, within Atu0692 at 689.366 kb on - strand, within Atu0692 at 689.470 kb on - strand, within Atu0692 at 689.472 kb on - strand, within Atu0692 at 689.572 kb on + strand, within Atu0692 at 689.682 kb on + strand, within Atu0692 at 689.682 kb on + strand, within Atu0692 at 689.690 kb on - strand, within Atu0692
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 686,786 - Atu0689 0.82 -1.3 686,843 + Atu0689 0.85 -0.3 686,917 - Atu0689 0.89 -2.2 686,931 + Atu0689 0.90 +0.7 686,939 - Atu0689 0.90 -2.0 686,939 - Atu0689 0.90 +0.1 687,107 + -0.8 687,150 + +1.3 687,158 - -1.8 687,368 - Atu0690 0.44 +0.0 687,498 + Atu0690 0.67 +0.7 687,600 + Atu0690 0.86 -2.6 687,604 - Atu0690 0.86 -0.1 687,674 - -0.5 687,756 + +0.9 687,854 + -0.7 687,943 + Atu0691 0.19 +0.5 687,951 - Atu0691 0.20 -0.9 687,979 - Atu0691 0.23 -0.8 687,984 + Atu0691 0.24 +1.5 688,104 + Atu0691 0.36 -1.1 688,128 + Atu0691 0.39 -2.5 688,133 + Atu0691 0.40 +0.8 688,136 - Atu0691 0.40 +0.2 688,236 + Atu0691 0.51 +1.7 688,256 - Atu0691 0.53 -0.0 688,305 + Atu0691 0.58 +0.5 688,305 + Atu0691 0.58 +0.2 688,305 + Atu0691 0.58 +1.0 688,305 + Atu0691 0.58 +0.5 688,305 + Atu0691 0.58 -0.3 688,305 + Atu0691 0.58 +1.6 688,305 + Atu0691 0.58 -1.4 688,313 - Atu0691 0.59 +1.2 688,313 - Atu0691 0.59 +0.1 688,313 - Atu0691 0.59 +1.0 688,470 + Atu0691 0.76 +0.4 688,473 - Atu0691 0.76 +2.1 688,562 - Atu0691 0.86 +1.4 688,587 + Atu0691 0.89 +0.9 688,646 + +1.1 688,687 - +0.3 688,818 + -2.4 688,849 + -1.1 688,857 - -1.7 688,857 - -0.4 688,884 + -2.0 688,976 - Atu0692 0.13 -1.8 689,138 + Atu0692 0.22 -3.0 689,171 + Atu0692 0.24 -2.1 689,183 + Atu0692 0.24 -4.3 689,269 - Atu0692 0.29 -1.2 689,321 + Atu0692 0.32 -2.6 689,366 - Atu0692 0.34 -2.6 689,470 - Atu0692 0.40 -1.1 689,472 - Atu0692 0.40 -2.7 689,572 + Atu0692 0.45 -3.5 689,682 + Atu0692 0.51 -3.6 689,682 + Atu0692 0.51 -2.3 689,690 - Atu0692 0.52 -2.2
Or see this region's nucleotide sequence