Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0341 and Atu0342 overlap by 1 nucleotides Atu0342 and Atu0343 are separated by 55 nucleotides Atu0343 and Atu0344 are separated by 94 nucleotides
Atu0341: Atu0341 - rRNA methylase, at 332,078 to 332,938
Atu0341
Atu0342: Atu0342 - lipoprotein signal peptidase, at 332,938 to 333,426
Atu0342
Atu0343: Atu0343 - two component sensor kinase/response regulator hybrid, at 333,482 to 335,722
Atu0343
Atu0344: Atu0344 - hypothetical protein, at 335,817 to 336,698
Atu0344
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 332.893 kb on + strand at 333.450 kb on + strand at 333.475 kb on + strand at 333.564 kb on - strand at 333.670 kb on + strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.729 kb on - strand, within Atu0343 at 333.766 kb on - strand, within Atu0343 at 333.947 kb on + strand, within Atu0343 at 333.955 kb on - strand, within Atu0343 at 333.986 kb on + strand, within Atu0343 at 333.995 kb on + strand, within Atu0343 at 334.007 kb on + strand, within Atu0343 at 334.009 kb on + strand, within Atu0343 at 334.023 kb on - strand, within Atu0343 at 334.136 kb on - strand, within Atu0343 at 334.182 kb on - strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.316 kb on - strand, within Atu0343 at 334.389 kb on + strand, within Atu0343 at 334.451 kb on - strand, within Atu0343 at 334.527 kb on + strand, within Atu0343 at 334.535 kb on - strand, within Atu0343 at 334.538 kb on + strand, within Atu0343 at 334.544 kb on + strand, within Atu0343 at 334.636 kb on - strand, within Atu0343 at 334.638 kb on + strand, within Atu0343 at 334.696 kb on + strand, within Atu0343 at 334.742 kb on - strand, within Atu0343 at 334.809 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.814 kb on - strand, within Atu0343 at 334.819 kb on - strand, within Atu0343 at 334.819 kb on - strand, within Atu0343 at 334.824 kb on + strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.895 kb on - strand, within Atu0343 at 334.902 kb on + strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.020 kb on + strand, within Atu0343 at 335.040 kb on + strand, within Atu0343 at 335.084 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.124 kb on - strand, within Atu0343 at 335.135 kb on + strand, within Atu0343 at 335.143 kb on - strand, within Atu0343 at 335.145 kb on + strand, within Atu0343 at 335.197 kb on - strand, within Atu0343 at 335.233 kb on + strand, within Atu0343 at 335.255 kb on + strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.296 kb on - strand, within Atu0343 at 335.307 kb on + strand, within Atu0343 at 335.433 kb on + strand, within Atu0343 at 335.639 kb on + strand at 335.647 kb on - strand at 335.679 kb on - strand at 335.706 kb on - strand at 335.706 kb on - strand at 335.884 kb on - strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.987 kb on + strand, within Atu0344 at 336.030 kb on + strand, within Atu0344 at 336.182 kb on - strand, within Atu0344 at 336.243 kb on - strand, within Atu0344 at 336.388 kb on - strand, within Atu0344 at 336.455 kb on - strand, within Atu0344 at 336.500 kb on + strand, within Atu0344 at 336.517 kb on - strand, within Atu0344 at 336.546 kb on + strand, within Atu0344
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 332,893 + -1.9 333,450 + -0.3 333,475 + -0.3 333,564 - -0.3 333,670 + +0.8 333,684 - +0.4 333,684 - +1.6 333,684 - -0.8 333,721 + Atu0343 0.11 -0.9 333,721 + Atu0343 0.11 +3.3 333,721 + Atu0343 0.11 +0.1 333,729 - Atu0343 0.11 -0.2 333,766 - Atu0343 0.13 -2.7 333,947 + Atu0343 0.21 -0.5 333,955 - Atu0343 0.21 -0.7 333,986 + Atu0343 0.22 +1.4 333,995 + Atu0343 0.23 +0.7 334,007 + Atu0343 0.23 -0.7 334,009 + Atu0343 0.24 +1.3 334,023 - Atu0343 0.24 +0.1 334,136 - Atu0343 0.29 -1.2 334,182 - Atu0343 0.31 +1.0 334,308 + Atu0343 0.37 +0.1 334,308 + Atu0343 0.37 +0.4 334,316 - Atu0343 0.37 -1.2 334,389 + Atu0343 0.40 -1.7 334,451 - Atu0343 0.43 +0.2 334,527 + Atu0343 0.47 +0.3 334,535 - Atu0343 0.47 +1.8 334,538 + Atu0343 0.47 +0.7 334,544 + Atu0343 0.47 +0.0 334,636 - Atu0343 0.51 +0.3 334,638 + Atu0343 0.52 +0.1 334,696 + Atu0343 0.54 -0.8 334,742 - Atu0343 0.56 -0.5 334,809 + Atu0343 0.59 +0.3 334,811 + Atu0343 0.59 -0.2 334,811 + Atu0343 0.59 +0.7 334,811 + Atu0343 0.59 +1.0 334,814 - Atu0343 0.59 -3.2 334,819 - Atu0343 0.60 -1.2 334,819 - Atu0343 0.60 +2.3 334,824 + Atu0343 0.60 +1.5 334,824 - Atu0343 0.60 -1.1 334,824 - Atu0343 0.60 -1.9 334,895 - Atu0343 0.63 +0.2 334,902 + Atu0343 0.63 -0.6 335,011 - Atu0343 0.68 +0.1 335,011 - Atu0343 0.68 +0.2 335,020 + Atu0343 0.69 -0.3 335,040 + Atu0343 0.70 +2.2 335,084 + Atu0343 0.71 -0.3 335,086 + Atu0343 0.72 -1.1 335,086 + Atu0343 0.72 +0.2 335,094 - Atu0343 0.72 +0.9 335,094 - Atu0343 0.72 -0.0 335,124 - Atu0343 0.73 -2.3 335,135 + Atu0343 0.74 -0.0 335,143 - Atu0343 0.74 +0.2 335,145 + Atu0343 0.74 +0.5 335,197 - Atu0343 0.77 +0.5 335,233 + Atu0343 0.78 -2.5 335,255 + Atu0343 0.79 -1.1 335,258 - Atu0343 0.79 +0.9 335,258 - Atu0343 0.79 +1.6 335,258 - Atu0343 0.79 +0.7 335,258 - Atu0343 0.79 -2.4 335,296 - Atu0343 0.81 +0.5 335,307 + Atu0343 0.81 +0.1 335,433 + Atu0343 0.87 -1.3 335,639 + +1.0 335,647 - -1.0 335,679 - -0.3 335,706 - +3.8 335,706 - +0.2 335,884 - +0.9 335,886 + +1.0 335,886 + -2.1 335,886 + +0.1 335,886 + -0.8 335,886 + +0.7 335,894 - +2.5 335,894 - -0.8 335,894 - -3.0 335,894 - +1.3 335,987 + Atu0344 0.19 +0.0 336,030 + Atu0344 0.24 -0.5 336,182 - Atu0344 0.41 +0.5 336,243 - Atu0344 0.48 +1.3 336,388 - Atu0344 0.65 -0.0 336,455 - Atu0344 0.72 -1.5 336,500 + Atu0344 0.77 +1.3 336,517 - Atu0344 0.79 -0.5 336,546 + Atu0344 0.83 -3.2
Or see this region's nucleotide sequence