Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0318 and Atu0319 are separated by 471 nucleotides Atu0319 and Atu0320 are separated by 36 nucleotides Atu0320 and Atu0321 are separated by 143 nucleotides
Atu0318: Atu0318 - hypothetical protein, at 310,694 to 311,608
Atu0318
Atu0319: Atu0319 - ubiquinone biosynthesis protein, at 312,080 to 313,654
Atu0319
Atu0320: Atu0320 - ubiquinone/menaquinone biosynthesis methyltransferase, at 313,691 to 314,467
Atu0320
Atu0321: Atu0321 - formamidopyrimidine-DNA glycosylase, at 314,611 to 315,507
Atu0321
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.121 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.199 kb on + strand, within Atu0318 at 311.204 kb on - strand, within Atu0318 at 311.228 kb on - strand, within Atu0318 at 311.325 kb on - strand, within Atu0318 at 311.398 kb on - strand, within Atu0318 at 311.417 kb on - strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.474 kb on + strand, within Atu0318 at 311.658 kb on - strand at 311.671 kb on - strand at 311.707 kb on - strand at 311.758 kb on + strand at 311.800 kb on - strand at 311.857 kb on + strand at 311.857 kb on + strand at 311.857 kb on + strand at 311.889 kb on + strand at 311.910 kb on - strand at 311.945 kb on + strand at 311.960 kb on + strand at 312.014 kb on - strand at 312.279 kb on - strand, within Atu0319 at 313.696 kb on - strand at 314.542 kb on - strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.567 kb on + strand at 314.570 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.637 kb on + strand at 314.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 311,121 + Atu0318 0.47 +2.0 311,149 + Atu0318 0.50 +0.2 311,149 + Atu0318 0.50 +0.2 311,196 + Atu0318 0.55 -0.6 311,196 + Atu0318 0.55 +0.2 311,199 + Atu0318 0.55 +0.1 311,204 - Atu0318 0.56 -0.8 311,228 - Atu0318 0.58 -0.5 311,325 - Atu0318 0.69 -0.8 311,398 - Atu0318 0.77 +0.1 311,417 - Atu0318 0.79 -0.5 311,459 + Atu0318 0.84 +0.4 311,459 + Atu0318 0.84 -0.2 311,474 + Atu0318 0.85 +0.4 311,658 - +0.4 311,671 - -1.1 311,707 - +1.2 311,758 + -1.7 311,800 - +0.2 311,857 + -0.1 311,857 + +1.0 311,857 + +0.9 311,889 + -0.7 311,910 - +0.1 311,945 + -0.4 311,960 + -0.3 312,014 - -0.2 312,279 - Atu0319 0.13 -1.5 313,696 - +0.4 314,542 - +0.0 314,567 + +2.0 314,567 + -0.2 314,567 + +0.0 314,567 + +0.2 314,567 + +0.5 314,567 + -0.0 314,567 + +0.5 314,567 + -2.0 314,567 + -0.6 314,567 + -0.3 314,567 + +0.0 314,567 + -1.2 314,567 + +0.4 314,567 + +0.0 314,570 - +0.9 314,575 - +1.1 314,575 - +0.1 314,575 - -0.0 314,575 - +0.4 314,575 - +0.0 314,575 - -0.0 314,575 - -0.8 314,575 - -0.7 314,575 - -1.6 314,575 - +0.7 314,575 - -1.2 314,575 - -0.2 314,575 - +0.3 314,575 - -0.5 314,575 - -0.9 314,637 + -0.6 314,637 + -0.9
Or see this region's nucleotide sequence