Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6141 and Atu6142 overlap by 4 nucleotides Atu6142 and Atu6143 overlap by 8 nucleotides Atu6143 and Atu6144 are separated by 15 nucleotides
Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878
Atu6141
Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801
Atu6142
Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654
Atu6143
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 160.882 kb on - strand at 160.882 kb on - strand at 160.897 kb on + strand at 160.900 kb on - strand at 160.941 kb on + strand at 160.986 kb on + strand, within Atu6141 at 161.013 kb on - strand, within Atu6141 at 161.029 kb on + strand, within Atu6141 at 161.029 kb on + strand, within Atu6141 at 161.032 kb on - strand, within Atu6141 at 161.037 kb on - strand, within Atu6141 at 161.044 kb on - strand, within Atu6141 at 161.053 kb on - strand, within Atu6141 at 161.080 kb on - strand, within Atu6141 at 161.108 kb on + strand, within Atu6141 at 161.116 kb on - strand, within Atu6141 at 161.226 kb on + strand, within Atu6141 at 161.236 kb on - strand, within Atu6141 at 161.277 kb on + strand, within Atu6141 at 161.315 kb on - strand, within Atu6141 at 161.323 kb on - strand, within Atu6141 at 161.406 kb on - strand, within Atu6141 at 161.501 kb on - strand, within Atu6141 at 161.582 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.603 kb on + strand, within Atu6141 at 161.611 kb on - strand, within Atu6141 at 161.611 kb on - strand, within Atu6141 at 161.611 kb on - strand, within Atu6141 at 161.611 kb on - strand, within Atu6141 at 161.618 kb on + strand, within Atu6141 at 161.628 kb on - strand, within Atu6141 at 161.632 kb on - strand, within Atu6141 at 161.637 kb on + strand, within Atu6141 at 161.649 kb on - strand, within Atu6141 at 161.658 kb on + strand, within Atu6141 at 161.698 kb on + strand, within Atu6141 at 161.706 kb on - strand, within Atu6141 at 161.706 kb on - strand, within Atu6141 at 161.808 kb on - strand at 161.808 kb on - strand at 161.810 kb on + strand at 161.847 kb on + strand at 162.029 kb on - strand, within Atu6142 at 162.029 kb on - strand, within Atu6142 at 162.031 kb on + strand, within Atu6142 at 162.032 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.039 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.053 kb on + strand, within Atu6142 at 162.061 kb on - strand, within Atu6142 at 162.063 kb on + strand, within Atu6142 at 162.071 kb on - strand, within Atu6142 at 162.122 kb on + strand, within Atu6142 at 162.138 kb on - strand, within Atu6142 at 162.156 kb on + strand, within Atu6142 at 162.270 kb on + strand, within Atu6142 at 162.287 kb on + strand, within Atu6142 at 162.288 kb on - strand, within Atu6142 at 162.457 kb on - strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.467 kb on - strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.480 kb on - strand, within Atu6142 at 162.613 kb on + strand, within Atu6142 at 162.617 kb on - strand, within Atu6142 at 162.630 kb on + strand, within Atu6142 at 162.640 kb on + strand, within Atu6142 at 162.711 kb on - strand at 162.726 kb on - strand at 162.771 kb on - strand at 162.851 kb on + strand at 162.861 kb on + strand at 162.861 kb on + strand at 162.869 kb on - strand at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.922 kb on - strand, within Atu6143 at 162.946 kb on + strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.949 kb on - strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.961 kb on - strand, within Atu6143 at 163.002 kb on - strand, within Atu6143 at 163.007 kb on - strand, within Atu6143 at 163.009 kb on + strand, within Atu6143 at 163.041 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.079 kb on + strand, within Atu6143 at 163.164 kb on + strand, within Atu6143 at 163.197 kb on - strand, within Atu6143 at 163.219 kb on - strand, within Atu6143 at 163.316 kb on + strand, within Atu6143 at 163.324 kb on + strand, within Atu6143 at 163.333 kb on - strand, within Atu6143 at 163.353 kb on - strand, within Atu6143 at 163.388 kb on + strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.458 kb on - strand, within Atu6143 at 163.469 kb on - strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.508 kb on + strand, within Atu6143 at 163.562 kb on + strand, within Atu6143 at 163.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 160,882 - -0.3 160,882 - -2.1 160,897 + -2.9 160,900 - -1.6 160,941 + -2.1 160,986 + Atu6141 0.12 -0.0 161,013 - Atu6141 0.15 +0.7 161,029 + Atu6141 0.17 +0.9 161,029 + Atu6141 0.17 +0.9 161,032 - Atu6141 0.17 +1.1 161,037 - Atu6141 0.17 -0.6 161,044 - Atu6141 0.18 -0.9 161,053 - Atu6141 0.19 +0.3 161,080 - Atu6141 0.22 -0.5 161,108 + Atu6141 0.24 +0.0 161,116 - Atu6141 0.25 -1.5 161,226 + Atu6141 0.36 -0.6 161,236 - Atu6141 0.37 -3.0 161,277 + Atu6141 0.41 -1.2 161,315 - Atu6141 0.45 +0.8 161,323 - Atu6141 0.45 -1.2 161,406 - Atu6141 0.54 -0.4 161,501 - Atu6141 0.63 +0.8 161,582 + Atu6141 0.71 +0.5 161,603 + Atu6141 0.73 -1.3 161,603 + Atu6141 0.73 +0.1 161,603 + Atu6141 0.73 -0.1 161,603 + Atu6141 0.73 -1.1 161,603 + Atu6141 0.73 +1.2 161,603 + Atu6141 0.73 -0.6 161,611 - Atu6141 0.74 -1.5 161,611 - Atu6141 0.74 -0.5 161,611 - Atu6141 0.74 -0.4 161,611 - Atu6141 0.74 -0.6 161,618 + Atu6141 0.74 +0.0 161,628 - Atu6141 0.75 +0.1 161,632 - Atu6141 0.76 -0.3 161,637 + Atu6141 0.76 -0.3 161,649 - Atu6141 0.77 -3.2 161,658 + Atu6141 0.78 -0.1 161,698 + Atu6141 0.82 -1.8 161,706 - Atu6141 0.83 -0.4 161,706 - Atu6141 0.83 -0.6 161,808 - -0.1 161,808 - -0.5 161,810 + -1.7 161,847 + -1.2 162,029 - Atu6142 0.17 +0.8 162,029 - Atu6142 0.17 +1.5 162,031 + Atu6142 0.17 -0.3 162,032 + Atu6142 0.17 -1.6 162,037 + Atu6142 0.17 +6.9 162,037 + Atu6142 0.17 +0.6 162,039 - Atu6142 0.18 +0.7 162,045 - Atu6142 0.18 +1.7 162,045 - Atu6142 0.18 +1.7 162,045 - Atu6142 0.18 -0.6 162,045 - Atu6142 0.18 +1.8 162,045 - Atu6142 0.18 -1.6 162,045 - Atu6142 0.18 -0.1 162,050 - Atu6142 0.19 +0.8 162,050 - Atu6142 0.19 +0.3 162,053 + Atu6142 0.19 -1.5 162,061 - Atu6142 0.20 -0.7 162,063 + Atu6142 0.20 +0.0 162,071 - Atu6142 0.21 +0.1 162,122 + Atu6142 0.27 +0.3 162,138 - Atu6142 0.28 +0.6 162,156 + Atu6142 0.30 -0.8 162,270 + Atu6142 0.43 +0.5 162,287 + Atu6142 0.44 +0.4 162,288 - Atu6142 0.45 -0.0 162,457 - Atu6142 0.63 -0.2 162,459 + Atu6142 0.63 -0.3 162,459 + Atu6142 0.63 -0.3 162,467 - Atu6142 0.64 -0.9 162,477 + Atu6142 0.65 +4.4 162,477 + Atu6142 0.65 -0.3 162,480 - Atu6142 0.65 -1.4 162,613 + Atu6142 0.80 +0.6 162,617 - Atu6142 0.80 -1.3 162,630 + Atu6142 0.81 -0.2 162,640 + Atu6142 0.83 -0.0 162,711 - +0.7 162,726 - +0.7 162,771 - -0.4 162,851 + -0.8 162,861 + -2.2 162,861 + -0.9 162,869 - -0.7 162,921 + Atu6143 0.15 -0.1 162,921 + Atu6143 0.15 +0.0 162,921 + Atu6143 0.15 -1.6 162,922 - Atu6143 0.15 +0.1 162,946 + Atu6143 0.18 -1.0 162,947 - Atu6143 0.18 +0.0 162,947 - Atu6143 0.18 -1.5 162,949 - Atu6143 0.18 -0.9 162,953 + Atu6143 0.18 +0.9 162,953 + Atu6143 0.18 -1.3 162,961 - Atu6143 0.19 -1.2 163,002 - Atu6143 0.24 -0.2 163,007 - Atu6143 0.25 -0.6 163,009 + Atu6143 0.25 -1.4 163,041 - Atu6143 0.29 +0.2 163,054 - Atu6143 0.30 +0.5 163,054 - Atu6143 0.30 -0.6 163,079 + Atu6143 0.33 +0.4 163,164 + Atu6143 0.43 -1.0 163,197 - Atu6143 0.47 -0.6 163,219 - Atu6143 0.49 -2.6 163,316 + Atu6143 0.61 +0.2 163,324 + Atu6143 0.62 -0.7 163,333 - Atu6143 0.63 -0.5 163,353 - Atu6143 0.65 +2.2 163,388 + Atu6143 0.69 +1.3 163,396 - Atu6143 0.70 -0.3 163,396 - Atu6143 0.70 -1.8 163,458 - Atu6143 0.77 -3.1 163,469 - Atu6143 0.78 -1.5 163,503 + Atu6143 0.82 +1.4 163,503 + Atu6143 0.82 -0.4 163,508 + Atu6143 0.83 -0.2 163,562 + Atu6143 0.89 -0.4 163,691 - +0.2
Or see this region's nucleotide sequence