Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3863 and Atu3864 are separated by 130 nucleotides Atu3864 and Atu3865 are separated by 213 nucleotides Atu3865 and Atu3866 are separated by 1 nucleotides
Atu3863: Atu3863 - ABC transporter permease, at 951,813 to 953,294
Atu3863
Atu3864: Atu3864 - hypothetical protein, at 953,425 to 953,697
Atu3864
Atu3865: Atu3865 - hypothetical protein, at 953,911 to 957,237
Atu3865
Atu3866: Atu3866 - hypothetical protein, at 957,239 to 959,644
Atu3866
Position (kb) 953
954
955
956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 952.954 kb on + strand, within Atu3863 at 952.960 kb on + strand, within Atu3863 at 952.995 kb on - strand, within Atu3863 at 952.995 kb on - strand, within Atu3863 at 953.026 kb on + strand, within Atu3863 at 953.143 kb on - strand, within Atu3863 at 953.180 kb on + strand at 953.180 kb on + strand at 953.180 kb on + strand at 953.188 kb on - strand at 953.251 kb on + strand at 953.251 kb on + strand at 953.265 kb on - strand at 953.280 kb on + strand at 953.412 kb on - strand at 953.439 kb on - strand at 953.472 kb on - strand, within Atu3864 at 953.515 kb on + strand, within Atu3864 at 953.515 kb on + strand, within Atu3864 at 953.595 kb on - strand, within Atu3864 at 953.595 kb on - strand, within Atu3864 at 953.674 kb on - strand at 953.709 kb on - strand at 953.709 kb on - strand at 953.711 kb on + strand at 953.752 kb on + strand at 953.752 kb on + strand at 953.774 kb on - strand at 953.788 kb on - strand at 953.808 kb on - strand at 953.859 kb on + strand at 953.909 kb on - strand at 953.914 kb on - strand at 953.914 kb on - strand at 953.978 kb on - strand at 954.006 kb on + strand at 954.009 kb on + strand at 954.017 kb on - strand at 954.058 kb on + strand at 954.140 kb on - strand at 954.168 kb on - strand at 954.284 kb on - strand, within Atu3865 at 954.320 kb on + strand, within Atu3865 at 954.320 kb on + strand, within Atu3865 at 954.328 kb on - strand, within Atu3865 at 954.408 kb on + strand, within Atu3865 at 954.524 kb on + strand, within Atu3865 at 954.608 kb on - strand, within Atu3865 at 954.641 kb on + strand, within Atu3865 at 954.644 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.649 kb on - strand, within Atu3865 at 954.654 kb on - strand, within Atu3865 at 954.685 kb on - strand, within Atu3865 at 954.685 kb on - strand, within Atu3865 at 954.708 kb on + strand, within Atu3865 at 954.777 kb on + strand, within Atu3865 at 954.808 kb on + strand, within Atu3865 at 954.841 kb on - strand, within Atu3865 at 954.871 kb on + strand, within Atu3865 at 954.895 kb on - strand, within Atu3865 at 955.059 kb on - strand, within Atu3865 at 955.064 kb on - strand, within Atu3865 at 955.080 kb on - strand, within Atu3865 at 955.123 kb on + strand, within Atu3865 at 955.139 kb on + strand, within Atu3865 at 955.225 kb on - strand, within Atu3865 at 955.253 kb on - strand, within Atu3865 at 955.281 kb on - strand, within Atu3865 at 955.302 kb on + strand, within Atu3865 at 955.345 kb on - strand, within Atu3865 at 955.345 kb on - strand, within Atu3865 at 955.345 kb on - strand, within Atu3865 at 955.387 kb on - strand, within Atu3865 at 955.416 kb on + strand, within Atu3865 at 955.514 kb on + strand, within Atu3865 at 955.527 kb on + strand, within Atu3865 at 955.539 kb on + strand, within Atu3865 at 955.542 kb on - strand, within Atu3865 at 955.558 kb on + strand, within Atu3865 at 955.566 kb on - strand, within Atu3865 at 955.572 kb on + strand, within Atu3865 at 955.656 kb on - strand, within Atu3865 at 955.656 kb on - strand, within Atu3865 at 955.670 kb on + strand, within Atu3865 at 955.896 kb on - strand, within Atu3865 at 955.898 kb on - strand, within Atu3865 at 955.898 kb on - strand, within Atu3865 at 955.916 kb on + strand, within Atu3865 at 955.987 kb on + strand, within Atu3865 at 955.987 kb on + strand, within Atu3865 at 956.019 kb on - strand, within Atu3865 at 956.113 kb on - strand, within Atu3865 at 956.120 kb on + strand, within Atu3865 at 956.172 kb on + strand, within Atu3865 at 956.172 kb on + strand, within Atu3865 at 956.178 kb on + strand, within Atu3865 at 956.181 kb on + strand, within Atu3865 at 956.292 kb on + strand, within Atu3865 at 956.304 kb on + strand, within Atu3865 at 956.368 kb on - strand, within Atu3865 at 956.397 kb on + strand, within Atu3865 at 956.405 kb on - strand, within Atu3865 at 956.423 kb on + strand, within Atu3865 at 956.664 kb on + strand, within Atu3865 at 956.664 kb on + strand, within Atu3865 at 956.734 kb on - strand, within Atu3865 at 956.775 kb on - strand, within Atu3865 at 956.775 kb on - strand, within Atu3865 at 956.843 kb on + strand, within Atu3865 at 956.844 kb on + strand, within Atu3865 at 956.857 kb on + strand, within Atu3865 at 956.897 kb on + strand, within Atu3865 at 956.937 kb on + strand at 957.000 kb on - strand at 957.028 kb on - strand at 957.117 kb on - strand at 957.222 kb on + strand at 957.262 kb on + strand at 957.302 kb on - strand at 957.303 kb on + strand at 957.303 kb on + strand at 957.303 kb on + strand at 957.352 kb on + strand at 957.372 kb on - strand at 957.420 kb on + strand at 957.425 kb on + strand at 957.458 kb on + strand at 957.524 kb on - strand, within Atu3866 at 957.524 kb on - strand, within Atu3866 at 957.524 kb on - strand, within Atu3866 at 957.561 kb on + strand, within Atu3866 at 957.625 kb on + strand, within Atu3866 at 957.650 kb on + strand, within Atu3866 at 957.830 kb on + strand, within Atu3866 at 957.837 kb on + strand, within Atu3866 at 957.855 kb on - strand, within Atu3866 at 957.984 kb on + strand, within Atu3866 at 958.043 kb on - strand, within Atu3866 at 958.069 kb on + strand, within Atu3866 at 958.069 kb on + strand, within Atu3866 at 958.077 kb on - strand, within Atu3866 at 958.094 kb on - strand, within Atu3866 at 958.094 kb on - strand, within Atu3866 at 958.141 kb on + strand, within Atu3866 at 958.141 kb on + strand, within Atu3866
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 952,954 + Atu3863 0.77 -2.0 952,960 + Atu3863 0.77 -0.0 952,995 - Atu3863 0.80 -0.3 952,995 - Atu3863 0.80 +0.8 953,026 + Atu3863 0.82 +0.7 953,143 - Atu3863 0.90 +0.4 953,180 + -0.1 953,180 + -0.2 953,180 + +2.6 953,188 - +1.1 953,251 + +0.5 953,251 + -0.8 953,265 - -0.5 953,280 + -0.9 953,412 - +2.7 953,439 - +0.1 953,472 - Atu3864 0.17 -0.8 953,515 + Atu3864 0.33 -1.4 953,515 + Atu3864 0.33 -2.2 953,595 - Atu3864 0.62 +1.0 953,595 - Atu3864 0.62 +0.0 953,674 - -0.6 953,709 - +1.0 953,709 - -0.6 953,711 + -3.1 953,752 + -0.7 953,752 + +0.3 953,774 - -0.2 953,788 - +0.6 953,808 - +1.6 953,859 + -0.2 953,909 - +1.1 953,914 - -0.9 953,914 - +0.1 953,978 - +0.3 954,006 + +0.4 954,009 + -3.4 954,017 - +0.3 954,058 + -0.0 954,140 - +0.8 954,168 - +0.6 954,284 - Atu3865 0.11 +0.4 954,320 + Atu3865 0.12 -0.7 954,320 + Atu3865 0.12 -0.7 954,328 - Atu3865 0.13 +0.0 954,408 + Atu3865 0.15 -0.2 954,524 + Atu3865 0.18 -1.4 954,608 - Atu3865 0.21 +0.3 954,641 + Atu3865 0.22 +2.2 954,644 - Atu3865 0.22 -0.2 954,649 - Atu3865 0.22 +1.3 954,649 - Atu3865 0.22 +1.0 954,649 - Atu3865 0.22 +0.6 954,654 - Atu3865 0.22 +0.1 954,685 - Atu3865 0.23 +3.6 954,685 - Atu3865 0.23 +0.2 954,708 + Atu3865 0.24 +0.2 954,777 + Atu3865 0.26 -0.1 954,808 + Atu3865 0.27 +1.8 954,841 - Atu3865 0.28 -1.8 954,871 + Atu3865 0.29 -1.1 954,895 - Atu3865 0.30 +0.0 955,059 - Atu3865 0.35 +0.3 955,064 - Atu3865 0.35 +0.2 955,080 - Atu3865 0.35 -0.1 955,123 + Atu3865 0.36 -0.0 955,139 + Atu3865 0.37 -0.3 955,225 - Atu3865 0.39 -2.9 955,253 - Atu3865 0.40 -1.3 955,281 - Atu3865 0.41 +0.7 955,302 + Atu3865 0.42 +1.8 955,345 - Atu3865 0.43 -0.7 955,345 - Atu3865 0.43 -0.3 955,345 - Atu3865 0.43 -2.0 955,387 - Atu3865 0.44 +4.5 955,416 + Atu3865 0.45 +0.3 955,514 + Atu3865 0.48 +0.8 955,527 + Atu3865 0.49 -0.2 955,539 + Atu3865 0.49 +1.8 955,542 - Atu3865 0.49 +1.9 955,558 + Atu3865 0.50 +0.4 955,566 - Atu3865 0.50 +0.3 955,572 + Atu3865 0.50 +0.1 955,656 - Atu3865 0.52 -1.1 955,656 - Atu3865 0.52 +0.9 955,670 + Atu3865 0.53 -0.2 955,896 - Atu3865 0.60 +1.1 955,898 - Atu3865 0.60 -3.2 955,898 - Atu3865 0.60 +0.1 955,916 + Atu3865 0.60 +2.2 955,987 + Atu3865 0.62 +0.9 955,987 + Atu3865 0.62 +0.6 956,019 - Atu3865 0.63 +1.6 956,113 - Atu3865 0.66 -0.6 956,120 + Atu3865 0.66 -1.3 956,172 + Atu3865 0.68 +1.0 956,172 + Atu3865 0.68 -0.9 956,178 + Atu3865 0.68 +1.3 956,181 + Atu3865 0.68 -0.2 956,292 + Atu3865 0.72 +0.0 956,304 + Atu3865 0.72 +0.8 956,368 - Atu3865 0.74 +0.1 956,397 + Atu3865 0.75 +0.2 956,405 - Atu3865 0.75 -0.7 956,423 + Atu3865 0.76 +1.8 956,664 + Atu3865 0.83 -2.9 956,664 + Atu3865 0.83 +0.5 956,734 - Atu3865 0.85 -0.4 956,775 - Atu3865 0.86 +0.8 956,775 - Atu3865 0.86 +0.6 956,843 + Atu3865 0.88 -0.7 956,844 + Atu3865 0.88 -1.2 956,857 + Atu3865 0.89 -0.1 956,897 + Atu3865 0.90 -1.1 956,937 + -2.6 957,000 - -1.1 957,028 - +1.0 957,117 - +2.3 957,222 + -0.5 957,262 + +0.3 957,302 - -0.1 957,303 + -0.1 957,303 + +0.5 957,303 + +2.1 957,352 + +0.2 957,372 - -0.2 957,420 + +0.1 957,425 + +0.1 957,458 + -1.1 957,524 - Atu3866 0.12 +1.4 957,524 - Atu3866 0.12 -0.3 957,524 - Atu3866 0.12 +0.3 957,561 + Atu3866 0.13 +0.1 957,625 + Atu3866 0.16 -1.9 957,650 + Atu3866 0.17 +0.0 957,830 + Atu3866 0.25 -0.2 957,837 + Atu3866 0.25 +0.6 957,855 - Atu3866 0.26 -0.3 957,984 + Atu3866 0.31 -0.1 958,043 - Atu3866 0.33 +0.5 958,069 + Atu3866 0.34 +0.5 958,069 + Atu3866 0.34 -1.0 958,077 - Atu3866 0.35 -0.9 958,094 - Atu3866 0.36 -0.2 958,094 - Atu3866 0.36 +0.4 958,141 + Atu3866 0.37 +0.7 958,141 + Atu3866 0.37 -1.5
Or see this region's nucleotide sequence