Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3367 and Atu3368 are separated by 388 nucleotides Atu3368 and Atu3369 are separated by 304 nucleotides
Atu3367: Atu3367 - TRAP dicarboxylate transporter subunit DctM, at 406,555 to 408,024
Atu3367
Atu3368: Atu3368 - periplasmic mannitol-binding protein, at 408,413 to 409,510
Atu3368
Atu3369: Atu3369 - hypothetical protein, at 409,815 to 410,570
Atu3369
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 407.672 kb on + strand, within Atu3367 at 407.680 kb on - strand, within Atu3367 at 407.703 kb on + strand, within Atu3367 at 407.739 kb on + strand, within Atu3367 at 407.746 kb on - strand, within Atu3367 at 407.747 kb on - strand, within Atu3367 at 407.787 kb on + strand, within Atu3367 at 407.802 kb on + strand, within Atu3367 at 407.814 kb on - strand, within Atu3367 at 407.820 kb on + strand, within Atu3367 at 407.828 kb on - strand, within Atu3367 at 407.930 kb on + strand at 408.086 kb on - strand at 408.173 kb on + strand at 408.173 kb on + strand at 408.173 kb on + strand at 408.181 kb on - strand at 408.206 kb on + strand at 408.211 kb on + strand at 408.291 kb on + strand at 408.299 kb on - strand at 408.344 kb on - strand at 408.419 kb on - strand at 408.509 kb on - strand at 408.589 kb on - strand, within Atu3368 at 408.810 kb on + strand, within Atu3368 at 408.818 kb on - strand, within Atu3368 at 408.885 kb on - strand, within Atu3368 at 408.889 kb on - strand, within Atu3368 at 409.050 kb on + strand, within Atu3368 at 409.050 kb on - strand, within Atu3368 at 409.059 kb on + strand, within Atu3368 at 409.166 kb on + strand, within Atu3368 at 409.174 kb on - strand, within Atu3368 at 409.174 kb on - strand, within Atu3368 at 409.309 kb on - strand, within Atu3368 at 409.362 kb on - strand, within Atu3368 at 409.364 kb on + strand, within Atu3368 at 409.422 kb on + strand at 409.440 kb on - strand at 409.509 kb on + strand at 409.593 kb on + strand at 409.711 kb on + strand at 409.729 kb on + strand at 409.913 kb on - strand, within Atu3369 at 409.993 kb on - strand, within Atu3369 at 410.029 kb on + strand, within Atu3369 at 410.077 kb on - strand, within Atu3369 at 410.147 kb on - strand, within Atu3369 at 410.221 kb on + strand, within Atu3369 at 410.221 kb on - strand, within Atu3369 at 410.221 kb on - strand, within Atu3369 at 410.245 kb on - strand, within Atu3369 at 410.306 kb on - strand, within Atu3369 at 410.310 kb on + strand, within Atu3369 at 410.486 kb on - strand, within Atu3369
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 407,672 + Atu3367 0.76 +0.1 407,680 - Atu3367 0.77 +0.6 407,703 + Atu3367 0.78 -0.2 407,739 + Atu3367 0.81 +0.7 407,746 - Atu3367 0.81 -0.3 407,747 - Atu3367 0.81 +0.0 407,787 + Atu3367 0.84 -0.8 407,802 + Atu3367 0.85 -2.1 407,814 - Atu3367 0.86 -0.4 407,820 + Atu3367 0.86 -0.4 407,828 - Atu3367 0.87 -0.4 407,930 + +0.4 408,086 - -2.1 408,173 + +2.8 408,173 + -2.4 408,173 + +2.2 408,181 - +3.5 408,206 + +0.2 408,211 + -0.0 408,291 + -0.1 408,299 - +1.0 408,344 - +4.1 408,419 - -1.3 408,509 - -1.0 408,589 - Atu3368 0.16 -0.3 408,810 + Atu3368 0.36 -0.7 408,818 - Atu3368 0.37 -1.5 408,885 - Atu3368 0.43 -1.3 408,889 - Atu3368 0.43 -0.3 409,050 + Atu3368 0.58 +0.0 409,050 - Atu3368 0.58 -1.3 409,059 + Atu3368 0.59 +1.0 409,166 + Atu3368 0.69 -0.7 409,174 - Atu3368 0.69 -0.3 409,174 - Atu3368 0.69 +0.4 409,309 - Atu3368 0.82 -0.4 409,362 - Atu3368 0.86 +0.1 409,364 + Atu3368 0.87 -2.6 409,422 + -0.9 409,440 - +0.4 409,509 + -1.1 409,593 + -1.2 409,711 + -0.2 409,729 + -2.6 409,913 - Atu3369 0.13 -0.5 409,993 - Atu3369 0.24 -0.7 410,029 + Atu3369 0.28 -0.1 410,077 - Atu3369 0.35 +0.2 410,147 - Atu3369 0.44 -0.5 410,221 + Atu3369 0.54 +0.4 410,221 - Atu3369 0.54 -0.9 410,221 - Atu3369 0.54 +0.5 410,245 - Atu3369 0.57 +1.0 410,306 - Atu3369 0.65 +0.4 410,310 + Atu3369 0.65 +1.2 410,486 - Atu3369 0.89 -2.7
Or see this region's nucleotide sequence