Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3335 and Atu8031 are separated by 41 nucleotides Atu8031 and Atu3336 are separated by 223 nucleotides Atu3336 and Atu3337 are separated by 174 nucleotides
Atu3335: Atu3335 - 3-methyladenine DNA glycosylase, at 369,819 to 370,400
Atu3335
Atu8031: Atu8031 - hypothetical protein, at 370,442 to 370,600
Atu8031
Atu3336: Atu3336 - hypothetical protein, at 370,824 to 371,021
Atu3336
Atu3337: Atu3337 - LacI family transcriptional regulator, at 371,196 to 372,209
Atu3337
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.853 kb on - strand at 369.876 kb on + strand at 369.950 kb on + strand, within Atu3335 at 370.011 kb on + strand, within Atu3335 at 370.014 kb on - strand, within Atu3335 at 370.031 kb on + strand, within Atu3335 at 370.066 kb on - strand, within Atu3335 at 370.204 kb on - strand, within Atu3335 at 370.226 kb on + strand, within Atu3335 at 370.229 kb on + strand, within Atu3335 at 370.236 kb on + strand, within Atu3335 at 370.279 kb on - strand, within Atu3335 at 370.297 kb on - strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.336 kb on - strand, within Atu3335 at 370.384 kb on + strand at 370.392 kb on - strand at 370.402 kb on - strand at 370.426 kb on - strand at 370.512 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.609 kb on + strand at 370.622 kb on + strand at 370.622 kb on + strand at 370.627 kb on + strand at 370.630 kb on - strand at 370.635 kb on - strand at 370.741 kb on + strand at 370.881 kb on + strand, within Atu3336 at 370.922 kb on + strand, within Atu3336 at 370.925 kb on - strand, within Atu3336 at 370.990 kb on - strand, within Atu3336 at 371.154 kb on - strand at 371.193 kb on + strand at 371.573 kb on + strand, within Atu3337 at 371.573 kb on + strand, within Atu3337 at 371.692 kb on + strand, within Atu3337 at 371.695 kb on - strand, within Atu3337 at 371.712 kb on + strand, within Atu3337 at 371.777 kb on - strand, within Atu3337 at 371.784 kb on + strand, within Atu3337 at 371.784 kb on + strand, within Atu3337 at 371.805 kb on - strand, within Atu3337 at 371.822 kb on - strand, within Atu3337 at 371.906 kb on + strand, within Atu3337 at 371.934 kb on + strand, within Atu3337 at 371.958 kb on - strand, within Atu3337 at 371.965 kb on + strand, within Atu3337 at 372.012 kb on + strand, within Atu3337
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 369,853 - -0.9 369,876 + +0.1 369,950 + Atu3335 0.23 -0.1 370,011 + Atu3335 0.33 +0.5 370,014 - Atu3335 0.34 -1.3 370,031 + Atu3335 0.36 -1.5 370,066 - Atu3335 0.42 +0.5 370,204 - Atu3335 0.66 +0.8 370,226 + Atu3335 0.70 -3.0 370,229 + Atu3335 0.70 -2.0 370,236 + Atu3335 0.72 +0.5 370,279 - Atu3335 0.79 -2.3 370,297 - Atu3335 0.82 -1.0 370,328 + Atu3335 0.87 +0.7 370,328 + Atu3335 0.87 +2.2 370,336 - Atu3335 0.89 +0.9 370,384 + +0.8 370,392 - -2.0 370,402 - +0.6 370,426 - -0.1 370,512 + Atu8031 0.44 +0.3 370,572 + Atu8031 0.82 +0.9 370,572 + Atu8031 0.82 -1.7 370,572 + Atu8031 0.82 +0.8 370,609 + -0.3 370,622 + -0.4 370,622 + -2.2 370,627 + -0.7 370,630 - +1.4 370,635 - -0.1 370,741 + +0.2 370,881 + Atu3336 0.29 -0.8 370,922 + Atu3336 0.49 -3.6 370,925 - Atu3336 0.51 -1.1 370,990 - Atu3336 0.84 -0.4 371,154 - -1.5 371,193 + +1.7 371,573 + Atu3337 0.37 +0.9 371,573 + Atu3337 0.37 +0.7 371,692 + Atu3337 0.49 -2.1 371,695 - Atu3337 0.49 -0.4 371,712 + Atu3337 0.51 +1.1 371,777 - Atu3337 0.57 -0.5 371,784 + Atu3337 0.58 -0.4 371,784 + Atu3337 0.58 -1.3 371,805 - Atu3337 0.60 -1.3 371,822 - Atu3337 0.62 -1.2 371,906 + Atu3337 0.70 -0.4 371,934 + Atu3337 0.73 -0.7 371,958 - Atu3337 0.75 +0.3 371,965 + Atu3337 0.76 -0.1 372,012 + Atu3337 0.80 -0.1
Or see this region's nucleotide sequence