Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3330 and Atu3331 are separated by 138 nucleotides Atu3331 and Atu3332 are separated by 19 nucleotides
Atu3330: Atu3330 - methyl-accepting chemotaxis protein, at 364,570 to 366,387
Atu3330
Atu3331: Atu3331 - hypothetical protein, at 366,526 to 367,311
Atu3331
Atu3332: Atu3332 - hypothetical protein, at 367,331 to 368,317
Atu3332
Position (kb) 366
367
368 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 365.554 kb on + strand, within Atu3330 at 365.562 kb on - strand, within Atu3330 at 365.567 kb on + strand, within Atu3330 at 365.664 kb on - strand, within Atu3330 at 365.693 kb on + strand, within Atu3330 at 365.737 kb on - strand, within Atu3330 at 365.767 kb on - strand, within Atu3330 at 365.967 kb on + strand, within Atu3330 at 366.058 kb on - strand, within Atu3330 at 366.063 kb on - strand, within Atu3330 at 366.112 kb on - strand, within Atu3330 at 366.162 kb on + strand, within Atu3330 at 366.189 kb on + strand, within Atu3330 at 366.199 kb on - strand, within Atu3330 at 366.225 kb on - strand at 366.240 kb on - strand at 366.497 kb on - strand at 366.542 kb on + strand at 366.627 kb on - strand, within Atu3331 at 366.705 kb on + strand, within Atu3331 at 366.768 kb on - strand, within Atu3331 at 366.983 kb on + strand, within Atu3331 at 366.992 kb on + strand, within Atu3331 at 367.000 kb on - strand, within Atu3331 at 367.086 kb on - strand, within Atu3331 at 367.247 kb on - strand at 367.276 kb on - strand at 367.296 kb on + strand at 367.410 kb on + strand at 367.418 kb on - strand at 367.484 kb on + strand, within Atu3332 at 367.529 kb on - strand, within Atu3332 at 367.639 kb on - strand, within Atu3332 at 367.701 kb on + strand, within Atu3332 at 367.787 kb on - strand, within Atu3332 at 367.787 kb on - strand, within Atu3332 at 367.792 kb on - strand, within Atu3332 at 367.793 kb on - strand, within Atu3332 at 367.793 kb on - strand, within Atu3332 at 367.877 kb on + strand, within Atu3332 at 367.920 kb on + strand, within Atu3332 at 367.958 kb on - strand, within Atu3332 at 367.994 kb on + strand, within Atu3332 at 368.094 kb on + strand, within Atu3332 at 368.094 kb on + strand, within Atu3332 at 368.102 kb on - strand, within Atu3332 at 368.137 kb on + strand, within Atu3332 at 368.145 kb on - strand, within Atu3332 at 368.173 kb on + strand, within Atu3332 at 368.190 kb on + strand, within Atu3332 at 368.215 kb on - strand, within Atu3332 at 368.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 365,554 + Atu3330 0.54 -0.5 365,562 - Atu3330 0.55 +1.1 365,567 + Atu3330 0.55 +1.5 365,664 - Atu3330 0.60 +2.4 365,693 + Atu3330 0.62 -0.0 365,737 - Atu3330 0.64 -0.9 365,767 - Atu3330 0.66 -0.7 365,967 + Atu3330 0.77 -0.1 366,058 - Atu3330 0.82 -0.1 366,063 - Atu3330 0.82 -0.1 366,112 - Atu3330 0.85 +0.4 366,162 + Atu3330 0.88 +0.4 366,189 + Atu3330 0.89 -0.5 366,199 - Atu3330 0.90 -0.4 366,225 - +0.8 366,240 - -1.3 366,497 - -0.6 366,542 + -0.8 366,627 - Atu3331 0.13 -1.0 366,705 + Atu3331 0.23 +0.8 366,768 - Atu3331 0.31 +0.8 366,983 + Atu3331 0.58 -2.1 366,992 + Atu3331 0.59 -1.3 367,000 - Atu3331 0.60 -1.3 367,086 - Atu3331 0.71 -0.6 367,247 - +0.3 367,276 - +2.4 367,296 + -0.5 367,410 + -0.2 367,418 - -2.2 367,484 + Atu3332 0.16 +1.7 367,529 - Atu3332 0.20 -2.7 367,639 - Atu3332 0.31 -0.6 367,701 + Atu3332 0.37 -0.6 367,787 - Atu3332 0.46 +1.1 367,787 - Atu3332 0.46 +0.3 367,792 - Atu3332 0.47 +0.3 367,793 - Atu3332 0.47 +0.1 367,793 - Atu3332 0.47 +0.3 367,877 + Atu3332 0.55 -0.3 367,920 + Atu3332 0.60 +1.9 367,958 - Atu3332 0.64 +3.6 367,994 + Atu3332 0.67 -1.3 368,094 + Atu3332 0.77 -0.5 368,094 + Atu3332 0.77 +0.6 368,102 - Atu3332 0.78 -1.9 368,137 + Atu3332 0.82 -2.3 368,145 - Atu3332 0.82 +0.4 368,173 + Atu3332 0.85 -0.5 368,190 + Atu3332 0.87 +0.0 368,215 - Atu3332 0.90 -0.5 368,289 - -0.9
Or see this region's nucleotide sequence