Strain Fitness in Agrobacterium fabrum C58 around Atu3244

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3243 and Atu3244 are separated by 310 nucleotidesAtu3244 and Atu3245 are separated by 30 nucleotidesAtu3245 and Atu3246 are separated by 71 nucleotides Atu3243: Atu3243 - hypothetical protein, at 260,020 to 261,381 Atu3243 Atu3244: Atu3244 - diguanylate cyclase, at 261,692 to 264,010 Atu3244 Atu3245: Atu3245 - amino acid ABC transporter substrate-binding protein, at 264,041 to 264,934 Atu3245 Atu3246: Atu3246 - amino acid ABC transporter substrate-binding protein, at 265,006 to 265,908 Atu3246 Position (kb) 261 262 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 260.708 kb on + strand, within Atu3243at 260.718 kb on - strand, within Atu3243at 260.762 kb on + strand, within Atu3243at 260.770 kb on - strand, within Atu3243at 260.771 kb on - strand, within Atu3243at 260.918 kb on - strand, within Atu3243at 260.951 kb on + strand, within Atu3243at 260.959 kb on - strand, within Atu3243at 261.073 kb on + strand, within Atu3243at 261.227 kb on + strand, within Atu3243at 261.276 kb on - strandat 261.303 kb on + strandat 261.326 kb on - strandat 261.352 kb on - strandat 261.451 kb on + strandat 261.527 kb on + strandat 261.680 kb on + strandat 261.694 kb on + strandat 261.704 kb on + strandat 261.725 kb on - strandat 261.725 kb on - strandat 261.758 kb on - strandat 261.857 kb on - strandat 261.997 kb on + strand, within Atu3244at 262.005 kb on - strand, within Atu3244at 262.073 kb on + strand, within Atu3244at 262.073 kb on + strand, within Atu3244at 262.084 kb on + strand, within Atu3244at 262.143 kb on + strand, within Atu3244at 262.143 kb on + strand, within Atu3244at 262.171 kb on - strand, within Atu3244at 262.196 kb on - strand, within Atu3244at 262.281 kb on - strand, within Atu3244at 262.316 kb on - strand, within Atu3244at 262.492 kb on - strand, within Atu3244at 262.604 kb on + strand, within Atu3244at 262.612 kb on + strand, within Atu3244at 262.612 kb on - strand, within Atu3244at 262.672 kb on - strand, within Atu3244at 262.690 kb on + strand, within Atu3244at 262.764 kb on + strand, within Atu3244at 262.789 kb on + strand, within Atu3244at 262.996 kb on - strand, within Atu3244at 263.062 kb on + strand, within Atu3244at 263.068 kb on - strand, within Atu3244at 263.113 kb on - strand, within Atu3244at 263.113 kb on - strand, within Atu3244at 263.129 kb on + strand, within Atu3244at 263.159 kb on + strand, within Atu3244at 263.159 kb on + strand, within Atu3244at 263.187 kb on - strand, within Atu3244at 263.239 kb on + strand, within Atu3244at 263.239 kb on + strand, within Atu3244at 263.326 kb on + strand, within Atu3244at 263.404 kb on + strand, within Atu3244at 263.412 kb on - strand, within Atu3244at 263.412 kb on - strand, within Atu3244at 263.427 kb on + strand, within Atu3244at 263.435 kb on - strand, within Atu3244at 263.463 kb on + strand, within Atu3244at 263.471 kb on - strand, within Atu3244at 263.586 kb on + strand, within Atu3244at 263.641 kb on - strand, within Atu3244at 263.703 kb on - strand, within Atu3244at 263.703 kb on - strand, within Atu3244at 263.755 kb on + strand, within Atu3244at 263.790 kb on + strandat 263.790 kb on + strandat 263.790 kb on + strandat 263.798 kb on - strandat 263.798 kb on - strandat 263.902 kb on - strandat 263.956 kb on - strandat 264.084 kb on + strandat 264.235 kb on - strand, within Atu3245at 264.265 kb on + strand, within Atu3245at 264.288 kb on - strand, within Atu3245at 264.301 kb on + strand, within Atu3245at 264.303 kb on - strand, within Atu3245at 264.368 kb on + strand, within Atu3245at 264.532 kb on - strand, within Atu3245at 264.553 kb on + strand, within Atu3245at 264.564 kb on + strand, within Atu3245at 264.661 kb on + strand, within Atu3245at 264.678 kb on + strand, within Atu3245at 264.687 kb on + strand, within Atu3245at 264.699 kb on + strand, within Atu3245at 264.766 kb on - strand, within Atu3245at 264.777 kb on + strand, within Atu3245at 264.781 kb on - strand, within Atu3245at 264.794 kb on + strand, within Atu3245at 264.802 kb on - strand, within Atu3245at 264.802 kb on - strand, within Atu3245at 264.885 kb on - strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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260,708 + Atu3243 0.51 -3.6
260,718 - Atu3243 0.51 -0.8
260,762 + Atu3243 0.54 -0.0
260,770 - Atu3243 0.55 -0.1
260,771 - Atu3243 0.55 -0.4
260,918 - Atu3243 0.66 +0.4
260,951 + Atu3243 0.68 +0.4
260,959 - Atu3243 0.69 +0.9
261,073 + Atu3243 0.77 -0.8
261,227 + Atu3243 0.89 +1.5
261,276 - -1.0
261,303 + -0.5
261,326 - -0.4
261,352 - -1.5
261,451 + +0.2
261,527 + -0.2
261,680 + -3.0
261,694 + +0.2
261,704 + +3.3
261,725 - -1.1
261,725 - -0.8
261,758 - -0.5
261,857 - +0.4
261,997 + Atu3244 0.13 +0.7
262,005 - Atu3244 0.13 +0.0
262,073 + Atu3244 0.16 -1.1
262,073 + Atu3244 0.16 -2.4
262,084 + Atu3244 0.17 +0.4
262,143 + Atu3244 0.19 -0.0
262,143 + Atu3244 0.19 -2.3
262,171 - Atu3244 0.21 -0.6
262,196 - Atu3244 0.22 -0.7
262,281 - Atu3244 0.25 -0.3
262,316 - Atu3244 0.27 -2.7
262,492 - Atu3244 0.34 +2.1
262,604 + Atu3244 0.39 -1.2
262,612 + Atu3244 0.40 +0.3
262,612 - Atu3244 0.40 -1.6
262,672 - Atu3244 0.42 +1.1
262,690 + Atu3244 0.43 +2.4
262,764 + Atu3244 0.46 -0.6
262,789 + Atu3244 0.47 -0.6
262,996 - Atu3244 0.56 -2.8
263,062 + Atu3244 0.59 +4.2
263,068 - Atu3244 0.59 -1.0
263,113 - Atu3244 0.61 +0.5
263,113 - Atu3244 0.61 +1.1
263,129 + Atu3244 0.62 -1.9
263,159 + Atu3244 0.63 -1.5
263,159 + Atu3244 0.63 -2.3
263,187 - Atu3244 0.64 +1.1
263,239 + Atu3244 0.67 -0.4
263,239 + Atu3244 0.67 +1.0
263,326 + Atu3244 0.70 +0.8
263,404 + Atu3244 0.74 -0.2
263,412 - Atu3244 0.74 -0.1
263,412 - Atu3244 0.74 -1.0
263,427 + Atu3244 0.75 -0.1
263,435 - Atu3244 0.75 -0.1
263,463 + Atu3244 0.76 -0.8
263,471 - Atu3244 0.77 -1.6
263,586 + Atu3244 0.82 -0.5
263,641 - Atu3244 0.84 -0.3
263,703 - Atu3244 0.87 +0.3
263,703 - Atu3244 0.87 +0.7
263,755 + Atu3244 0.89 -0.2
263,790 + -1.0
263,790 + -0.6
263,790 + -0.9
263,798 - +0.2
263,798 - -0.4
263,902 - +0.4
263,956 - -1.4
264,084 + +0.6
264,235 - Atu3245 0.22 -0.7
264,265 + Atu3245 0.25 -0.5
264,288 - Atu3245 0.28 -0.7
264,301 + Atu3245 0.29 -0.1
264,303 - Atu3245 0.29 +1.5
264,368 + Atu3245 0.37 +1.5
264,532 - Atu3245 0.55 +0.3
264,553 + Atu3245 0.57 +0.3
264,564 + Atu3245 0.59 +0.4
264,661 + Atu3245 0.69 +0.5
264,678 + Atu3245 0.71 +0.2
264,687 + Atu3245 0.72 +0.7
264,699 + Atu3245 0.74 -1.2
264,766 - Atu3245 0.81 +1.2
264,777 + Atu3245 0.82 +0.6
264,781 - Atu3245 0.83 +2.5
264,794 + Atu3245 0.84 +0.6
264,802 - Atu3245 0.85 +0.2
264,802 - Atu3245 0.85 -0.4
264,885 - -0.3
264,891 + -0.4
264,891 + -3.6
264,891 + +0.1

Or see this region's nucleotide sequence