Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3229 and Atu3230 are separated by 13 nucleotides Atu3230 and Atu8184 are separated by 157 nucleotides Atu8184 and Atu3232 overlap by 4 nucleotides
Atu3229: Atu3229 - hypothetical protein, at 245,605 to 247,023
Atu3229
Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801
Atu3230
Atu8184: Atu8184 - hypothetical protein, at 247,959 to 248,372
Atu8184
Atu3232: Atu3232 - hydroxypyruvate reductase, at 248,369 to 249,649
Atu3232
Position (kb) 247
248 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.069 kb on + strand, within Atu3229 at 246.082 kb on - strand, within Atu3229 at 246.108 kb on + strand, within Atu3229 at 246.187 kb on + strand, within Atu3229 at 246.223 kb on - strand, within Atu3229 at 246.261 kb on - strand, within Atu3229 at 246.371 kb on + strand, within Atu3229 at 246.379 kb on - strand, within Atu3229 at 246.390 kb on + strand, within Atu3229 at 246.411 kb on - strand, within Atu3229 at 246.516 kb on + strand, within Atu3229 at 246.572 kb on - strand, within Atu3229 at 246.629 kb on + strand, within Atu3229 at 246.637 kb on - strand, within Atu3229 at 246.777 kb on + strand, within Atu3229 at 246.787 kb on + strand, within Atu3229 at 246.795 kb on - strand, within Atu3229 at 246.828 kb on + strand, within Atu3229 at 246.867 kb on + strand, within Atu3229 at 246.874 kb on + strand, within Atu3229 at 246.960 kb on + strand at 246.960 kb on + strand at 246.975 kb on - strand at 247.052 kb on + strand at 247.277 kb on - strand, within Atu3230 at 247.287 kb on - strand, within Atu3230 at 247.426 kb on - strand, within Atu3230 at 247.485 kb on + strand, within Atu3230 at 247.528 kb on - strand, within Atu3230 at 247.533 kb on - strand, within Atu3230 at 247.544 kb on + strand, within Atu3230 at 247.552 kb on - strand, within Atu3230 at 247.637 kb on - strand, within Atu3230 at 247.645 kb on + strand, within Atu3230 at 247.731 kb on - strand at 247.742 kb on - strand at 247.870 kb on + strand at 247.899 kb on - strand at 248.010 kb on - strand, within Atu8184 at 248.180 kb on - strand, within Atu8184 at 248.212 kb on + strand, within Atu8184 at 248.240 kb on - strand, within Atu8184 at 248.266 kb on - strand, within Atu8184 at 248.342 kb on - strand at 248.392 kb on - strand at 248.487 kb on + strand at 248.583 kb on + strand, within Atu3232 at 248.791 kb on - strand, within Atu3232
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 246,069 + Atu3229 0.33 -0.6 246,082 - Atu3229 0.34 -0.0 246,108 + Atu3229 0.35 -1.7 246,187 + Atu3229 0.41 -0.1 246,223 - Atu3229 0.44 +0.5 246,261 - Atu3229 0.46 +0.6 246,371 + Atu3229 0.54 -0.0 246,379 - Atu3229 0.55 -0.8 246,390 + Atu3229 0.55 +3.2 246,411 - Atu3229 0.57 -0.4 246,516 + Atu3229 0.64 -0.4 246,572 - Atu3229 0.68 +0.9 246,629 + Atu3229 0.72 +0.9 246,637 - Atu3229 0.73 +0.5 246,777 + Atu3229 0.83 -1.0 246,787 + Atu3229 0.83 +1.6 246,795 - Atu3229 0.84 -0.7 246,828 + Atu3229 0.86 -0.8 246,867 + Atu3229 0.89 -0.9 246,874 + Atu3229 0.89 +0.7 246,960 + +1.1 246,960 + -0.5 246,975 - -0.9 247,052 + -0.3 247,277 - Atu3230 0.31 -0.2 247,287 - Atu3230 0.33 +0.3 247,426 - Atu3230 0.51 +0.1 247,485 + Atu3230 0.59 -0.4 247,528 - Atu3230 0.64 -1.0 247,533 - Atu3230 0.65 +0.3 247,544 + Atu3230 0.66 -1.0 247,552 - Atu3230 0.67 -2.1 247,637 - Atu3230 0.78 -2.5 247,645 + Atu3230 0.79 -0.4 247,731 - +0.1 247,742 - +0.5 247,870 + +0.3 247,899 - -1.0 248,010 - Atu8184 0.12 +0.1 248,180 - Atu8184 0.53 -2.3 248,212 + Atu8184 0.61 +1.9 248,240 - Atu8184 0.68 -1.0 248,266 - Atu8184 0.74 -1.2 248,342 - +0.2 248,392 - -0.5 248,487 + -0.4 248,583 + Atu3232 0.17 -0.2 248,791 - Atu3232 0.33 -1.0
Or see this region's nucleotide sequence