Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3170 and Atu3171 are separated by 10 nucleotides Atu3171 and Atu3172 are separated by 4 nucleotides Atu3172 and Atu3173 are separated by 3 nucleotides
Atu3170: Atu3170 - sorbitol/mannitol ABC transporter ATPase, at 179,946 to 180,944
Atu3170
Atu3171: Atu3171 - sugar ABC transporter ATPase, at 180,955 to 182,031
Atu3171
Atu3172: Atu3172 - sugar ABC transporter permease, at 182,036 to 182,866
Atu3172
Atu3173: Atu3173 - sugar ABC transporter permease, at 182,870 to 183,754
Atu3173
Position (kb) 180
181
182
183 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 179.979 kb on - strand at 180.205 kb on + strand, within Atu3170 at 180.253 kb on - strand, within Atu3170 at 180.260 kb on + strand, within Atu3170 at 180.292 kb on - strand, within Atu3170 at 180.363 kb on - strand, within Atu3170 at 180.399 kb on + strand, within Atu3170 at 180.407 kb on - strand, within Atu3170 at 180.428 kb on + strand, within Atu3170 at 180.457 kb on - strand, within Atu3170 at 180.488 kb on - strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.663 kb on + strand, within Atu3170 at 180.767 kb on + strand, within Atu3170 at 180.807 kb on - strand, within Atu3170 at 180.884 kb on + strand at 180.900 kb on - strand at 180.953 kb on + strand at 180.961 kb on - strand at 181.083 kb on - strand, within Atu3171 at 181.107 kb on + strand, within Atu3171 at 181.179 kb on + strand, within Atu3171 at 181.222 kb on + strand, within Atu3171 at 181.392 kb on + strand, within Atu3171 at 181.398 kb on - strand, within Atu3171 at 181.450 kb on - strand, within Atu3171 at 181.452 kb on + strand, within Atu3171 at 181.458 kb on + strand, within Atu3171 at 181.543 kb on - strand, within Atu3171 at 181.667 kb on - strand, within Atu3171 at 181.742 kb on - strand, within Atu3171 at 181.769 kb on + strand, within Atu3171 at 181.820 kb on - strand, within Atu3171 at 181.972 kb on + strand at 181.989 kb on + strand at 182.033 kb on + strand at 182.033 kb on + strand at 182.073 kb on + strand at 182.133 kb on + strand, within Atu3172 at 182.360 kb on + strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.420 kb on + strand, within Atu3172 at 182.428 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.563 kb on - strand, within Atu3172 at 182.586 kb on + strand, within Atu3172 at 182.623 kb on + strand, within Atu3172 at 182.722 kb on + strand, within Atu3172 at 182.742 kb on + strand, within Atu3172 at 182.790 kb on + strand at 182.862 kb on + strand at 182.868 kb on + strand at 182.868 kb on + strand at 182.911 kb on + strand at 182.919 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 179,979 - +1.1 180,205 + Atu3170 0.26 +0.3 180,253 - Atu3170 0.31 +0.2 180,260 + Atu3170 0.31 -0.6 180,292 - Atu3170 0.35 -1.8 180,363 - Atu3170 0.42 -0.8 180,399 + Atu3170 0.45 -0.4 180,407 - Atu3170 0.46 -2.2 180,428 + Atu3170 0.48 -0.3 180,457 - Atu3170 0.51 -0.4 180,488 - Atu3170 0.54 -0.9 180,527 + Atu3170 0.58 +0.2 180,527 + Atu3170 0.58 +0.2 180,535 - Atu3170 0.59 -1.7 180,535 - Atu3170 0.59 +0.3 180,663 + Atu3170 0.72 +1.2 180,767 + Atu3170 0.82 +1.4 180,807 - Atu3170 0.86 -0.2 180,884 + +2.2 180,900 - +0.2 180,953 + -1.9 180,961 - +0.6 181,083 - Atu3171 0.12 -1.0 181,107 + Atu3171 0.14 -3.3 181,179 + Atu3171 0.21 -4.9 181,222 + Atu3171 0.25 +1.5 181,392 + Atu3171 0.41 +0.4 181,398 - Atu3171 0.41 +0.2 181,450 - Atu3171 0.46 -0.4 181,452 + Atu3171 0.46 -1.5 181,458 + Atu3171 0.47 +0.6 181,543 - Atu3171 0.55 +0.9 181,667 - Atu3171 0.66 -2.8 181,742 - Atu3171 0.73 +0.5 181,769 + Atu3171 0.76 +1.4 181,820 - Atu3171 0.80 -0.9 181,972 + +0.6 181,989 + -0.2 182,033 + -3.6 182,033 + +1.5 182,073 + -0.4 182,133 + Atu3172 0.12 +0.0 182,360 + Atu3172 0.39 -1.6 182,367 - Atu3172 0.40 +0.3 182,367 - Atu3172 0.40 -1.5 182,420 + Atu3172 0.46 -2.1 182,428 - Atu3172 0.47 +0.3 182,438 - Atu3172 0.48 -2.0 182,438 - Atu3172 0.48 +1.9 182,563 - Atu3172 0.63 +0.0 182,586 + Atu3172 0.66 -0.1 182,623 + Atu3172 0.71 -2.0 182,722 + Atu3172 0.83 +0.5 182,742 + Atu3172 0.85 +4.5 182,790 + -0.5 182,862 + +0.7 182,868 + -0.8 182,868 + -1.6 182,911 + -1.6 182,919 - -1.0 182,924 - -0.9 182,924 - +0.1 182,924 - -0.4
Or see this region's nucleotide sequence