Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3117 and Atu3118 are separated by 24 nucleotides Atu3118 and Atu3119 are separated by 18 nucleotides
Atu3117: Atu3117 - hypothetical protein, at 127,163 to 128,326
Atu3117
Atu3118: Atu3118 - hypothetical protein, at 128,351 to 129,172
Atu3118
Atu3119: Atu3119 - hypothetical protein, at 129,191 to 130,426
Atu3119
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 127.392 kb on + strand, within Atu3117 at 127.394 kb on - strand, within Atu3117 at 127.408 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.559 kb on - strand, within Atu3117 at 127.687 kb on - strand, within Atu3117 at 127.691 kb on + strand, within Atu3117 at 127.753 kb on + strand, within Atu3117 at 127.867 kb on + strand, within Atu3117 at 127.905 kb on - strand, within Atu3117 at 127.931 kb on - strand, within Atu3117 at 127.946 kb on - strand, within Atu3117 at 127.974 kb on - strand, within Atu3117 at 128.016 kb on + strand, within Atu3117 at 128.213 kb on + strand at 128.226 kb on - strand at 128.250 kb on + strand at 128.276 kb on - strand at 128.460 kb on + strand, within Atu3118 at 128.468 kb on - strand, within Atu3118 at 128.478 kb on - strand, within Atu3118 at 128.513 kb on - strand, within Atu3118 at 128.643 kb on + strand, within Atu3118 at 128.643 kb on + strand, within Atu3118 at 128.649 kb on + strand, within Atu3118 at 128.784 kb on - strand, within Atu3118 at 128.809 kb on + strand, within Atu3118 at 128.839 kb on - strand, within Atu3118 at 128.906 kb on - strand, within Atu3118 at 128.938 kb on - strand, within Atu3118 at 128.959 kb on + strand, within Atu3118 at 128.991 kb on + strand, within Atu3118 at 129.031 kb on + strand, within Atu3118 at 129.031 kb on + strand, within Atu3118 at 129.031 kb on + strand, within Atu3118 at 129.039 kb on - strand, within Atu3118 at 129.067 kb on + strand, within Atu3118 at 129.075 kb on - strand, within Atu3118 at 129.162 kb on - strand at 129.291 kb on + strand at 129.328 kb on - strand, within Atu3119 at 129.328 kb on - strand, within Atu3119 at 129.352 kb on + strand, within Atu3119 at 129.399 kb on - strand, within Atu3119 at 129.416 kb on - strand, within Atu3119 at 129.432 kb on + strand, within Atu3119 at 129.440 kb on - strand, within Atu3119 at 129.455 kb on + strand, within Atu3119 at 129.480 kb on + strand, within Atu3119 at 129.493 kb on - strand, within Atu3119 at 129.558 kb on - strand, within Atu3119 at 129.835 kb on + strand, within Atu3119 at 129.905 kb on - strand, within Atu3119 at 129.921 kb on + strand, within Atu3119 at 129.954 kb on - strand, within Atu3119 at 130.053 kb on - strand, within Atu3119 at 130.103 kb on - strand, within Atu3119 at 130.112 kb on - strand, within Atu3119 at 130.159 kb on + strand, within Atu3119
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 127,392 + Atu3117 0.20 -0.8 127,394 - Atu3117 0.20 +0.7 127,408 + Atu3117 0.21 +0.5 127,430 + Atu3117 0.23 +1.1 127,430 + Atu3117 0.23 +2.7 127,430 + Atu3117 0.23 +0.1 127,559 - Atu3117 0.34 -0.4 127,687 - Atu3117 0.45 -0.7 127,691 + Atu3117 0.45 +0.4 127,753 + Atu3117 0.51 +0.7 127,867 + Atu3117 0.60 -2.3 127,905 - Atu3117 0.64 -3.0 127,931 - Atu3117 0.66 +0.5 127,946 - Atu3117 0.67 -2.0 127,974 - Atu3117 0.70 -0.4 128,016 + Atu3117 0.73 -1.3 128,213 + -0.3 128,226 - +0.0 128,250 + +1.9 128,276 - -0.9 128,460 + Atu3118 0.13 +0.5 128,468 - Atu3118 0.14 +0.6 128,478 - Atu3118 0.15 +1.8 128,513 - Atu3118 0.20 -0.9 128,643 + Atu3118 0.36 +0.0 128,643 + Atu3118 0.36 +0.6 128,649 + Atu3118 0.36 +1.5 128,784 - Atu3118 0.53 -2.2 128,809 + Atu3118 0.56 -0.5 128,839 - Atu3118 0.59 +1.6 128,906 - Atu3118 0.68 +1.2 128,938 - Atu3118 0.71 -0.2 128,959 + Atu3118 0.74 -1.1 128,991 + Atu3118 0.78 -0.2 129,031 + Atu3118 0.83 +0.5 129,031 + Atu3118 0.83 -0.1 129,031 + Atu3118 0.83 +2.4 129,039 - Atu3118 0.84 -0.7 129,067 + Atu3118 0.87 -0.4 129,075 - Atu3118 0.88 -2.0 129,162 - -1.4 129,291 + -0.2 129,328 - Atu3119 0.11 -0.9 129,328 - Atu3119 0.11 -1.1 129,352 + Atu3119 0.13 +0.3 129,399 - Atu3119 0.17 +1.3 129,416 - Atu3119 0.18 -1.8 129,432 + Atu3119 0.19 -0.5 129,440 - Atu3119 0.20 +0.3 129,455 + Atu3119 0.21 -0.7 129,480 + Atu3119 0.23 +0.6 129,493 - Atu3119 0.24 +0.8 129,558 - Atu3119 0.30 +0.7 129,835 + Atu3119 0.52 +0.3 129,905 - Atu3119 0.58 -1.1 129,921 + Atu3119 0.59 -1.4 129,954 - Atu3119 0.62 +2.5 130,053 - Atu3119 0.70 -0.6 130,103 - Atu3119 0.74 -0.6 130,112 - Atu3119 0.75 -0.1 130,159 + Atu3119 0.78 +0.9
Or see this region's nucleotide sequence