Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0933 and Atu0934 are separated by 27 nucleotides Atu0934 and Atu0935 overlap by 4 nucleotides Atu0935 and Atu0936 are separated by 107 nucleotides Atu0936 and Atu0937 are separated by 235 nucleotides
Atu0933: Atu0933 - beta-lactamase class D, at 923,289 to 924,113
Atu0933
Atu0934: Atu0934 - hypothetical protein, at 924,141 to 924,476
Atu0934
Atu0935: Atu0935 - hypothetical protein, at 924,473 to 924,748
Atu0935
Atu0936: Atu0936 - methyltransferase, at 924,856 to 925,464
Atu0936
Atu0937: Atu0937 - copper transporting ATPase, at 925,700 to 928,225
Atu0937
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 923.994 kb on + strand, within Atu0933 at 923.994 kb on + strand, within Atu0933 at 924.036 kb on + strand at 924.058 kb on - strand at 924.208 kb on + strand, within Atu0934 at 924.208 kb on + strand, within Atu0934 at 924.216 kb on - strand, within Atu0934 at 924.259 kb on - strand, within Atu0934 at 924.272 kb on + strand, within Atu0934 at 924.280 kb on - strand, within Atu0934 at 924.280 kb on - strand, within Atu0934 at 924.343 kb on - strand, within Atu0934 at 924.407 kb on + strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.443 kb on - strand at 924.507 kb on + strand, within Atu0935 at 924.675 kb on - strand, within Atu0935 at 924.685 kb on - strand, within Atu0935 at 924.706 kb on - strand, within Atu0935 at 924.756 kb on - strand at 924.758 kb on + strand at 924.758 kb on + strand at 924.758 kb on + strand at 924.766 kb on - strand at 924.766 kb on - strand at 924.775 kb on + strand at 924.874 kb on - strand at 924.890 kb on + strand at 925.048 kb on + strand, within Atu0936 at 925.267 kb on + strand, within Atu0936 at 925.312 kb on + strand, within Atu0936 at 925.354 kb on + strand, within Atu0936 at 925.362 kb on - strand, within Atu0936 at 925.404 kb on + strand at 925.414 kb on + strand at 925.465 kb on + strand at 925.470 kb on + strand at 925.470 kb on + strand at 925.478 kb on - strand at 925.478 kb on - strand at 925.480 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.619 kb on + strand at 925.627 kb on - strand at 925.747 kb on + strand at 925.912 kb on + strand at 925.920 kb on - strand at 925.927 kb on + strand at 925.935 kb on - strand at 925.957 kb on - strand, within Atu0937 at 925.972 kb on + strand, within Atu0937 at 926.046 kb on - strand, within Atu0937 at 926.046 kb on - strand, within Atu0937 at 926.061 kb on + strand, within Atu0937 at 926.074 kb on - strand, within Atu0937 at 926.119 kb on + strand, within Atu0937 at 926.126 kb on + strand, within Atu0937 at 926.174 kb on + strand, within Atu0937 at 926.216 kb on - strand, within Atu0937 at 926.302 kb on - strand, within Atu0937 at 926.319 kb on - strand, within Atu0937 at 926.457 kb on + strand, within Atu0937
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 923,994 + Atu0933 0.85 +0.2 923,994 + Atu0933 0.85 +0.3 924,036 + +0.2 924,058 - -0.6 924,208 + Atu0934 0.20 -0.6 924,208 + Atu0934 0.20 +0.5 924,216 - Atu0934 0.22 +1.2 924,259 - Atu0934 0.35 +2.1 924,272 + Atu0934 0.39 +1.7 924,280 - Atu0934 0.41 +1.2 924,280 - Atu0934 0.41 +3.7 924,343 - Atu0934 0.60 -0.0 924,407 + Atu0934 0.79 +0.0 924,415 - Atu0934 0.82 +0.3 924,415 - Atu0934 0.82 -0.5 924,415 - Atu0934 0.82 -0.3 924,443 - -0.1 924,507 + Atu0935 0.12 +2.2 924,675 - Atu0935 0.73 +0.6 924,685 - Atu0935 0.77 -0.2 924,706 - Atu0935 0.84 +0.6 924,756 - +0.2 924,758 + -0.2 924,758 + -1.9 924,758 + +0.1 924,766 - +1.7 924,766 - +1.0 924,775 + -0.3 924,874 - -0.4 924,890 + +0.6 925,048 + Atu0936 0.32 -1.1 925,267 + Atu0936 0.67 -0.1 925,312 + Atu0936 0.75 +0.3 925,354 + Atu0936 0.82 -0.9 925,362 - Atu0936 0.83 -1.1 925,404 + +1.0 925,414 + -0.7 925,465 + -1.2 925,470 + -0.2 925,470 + -0.8 925,478 - +1.1 925,478 - +1.0 925,480 - +0.8 925,584 + -2.6 925,584 + -1.1 925,619 + -0.7 925,627 - -0.1 925,747 + +0.5 925,912 + +0.3 925,920 - +0.5 925,927 + +0.3 925,935 - +0.0 925,957 - Atu0937 0.10 -2.3 925,972 + Atu0937 0.11 -2.6 926,046 - Atu0937 0.14 -0.9 926,046 - Atu0937 0.14 -0.8 926,061 + Atu0937 0.14 -0.1 926,074 - Atu0937 0.15 -0.2 926,119 + Atu0937 0.17 -1.8 926,126 + Atu0937 0.17 -0.2 926,174 + Atu0937 0.19 +1.0 926,216 - Atu0937 0.20 -0.6 926,302 - Atu0937 0.24 +3.1 926,319 - Atu0937 0.25 +0.8 926,457 + Atu0937 0.30 +0.0
Or see this region's nucleotide sequence