Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0882 and Atu0883 are separated by 455 nucleotides Atu0883 and Atu0884 are separated by 11 nucleotides Atu0884 and Atu0885 are separated by 4 nucleotides
Atu0882: Atu0882 - hypothetical protein, at 876,640 to 877,560
Atu0882
Atu0883: Atu0883 - hypothetical protein, at 878,016 to 878,198
Atu0883
Atu0884: Atu0884 - hypothetical protein, at 878,210 to 878,920
Atu0884
Atu0885: Atu0885 - hypothetical protein, at 878,925 to 879,239
Atu0885
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.125 kb on + strand, within Atu0882 at 877.158 kb on - strand, within Atu0882 at 877.197 kb on - strand, within Atu0882 at 877.480 kb on + strand at 877.481 kb on - strand at 877.506 kb on - strand at 877.563 kb on - strand at 877.596 kb on + strand at 877.609 kb on - strand at 877.668 kb on + strand at 877.668 kb on + strand at 877.678 kb on + strand at 877.772 kb on + strand at 877.772 kb on + strand at 877.872 kb on - strand at 877.874 kb on - strand at 877.924 kb on - strand at 877.991 kb on + strand at 878.124 kb on - strand, within Atu0883 at 878.135 kb on + strand, within Atu0883 at 878.143 kb on - strand, within Atu0883 at 878.413 kb on - strand, within Atu0884 at 878.417 kb on + strand, within Atu0884 at 878.543 kb on - strand, within Atu0884 at 878.717 kb on + strand, within Atu0884 at 878.724 kb on - strand, within Atu0884 at 878.740 kb on + strand, within Atu0884 at 878.748 kb on - strand, within Atu0884 at 879.067 kb on + strand, within Atu0885 at 879.094 kb on + strand, within Atu0885 at 879.158 kb on - strand, within Atu0885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 877,125 + Atu0882 0.53 +0.8 877,158 - Atu0882 0.56 -1.9 877,197 - Atu0882 0.60 +2.4 877,480 + +1.2 877,481 - +0.2 877,506 - +0.3 877,563 - +1.4 877,596 + +0.0 877,609 - +2.5 877,668 + -1.0 877,668 + -0.1 877,678 + +1.7 877,772 + -1.3 877,772 + -0.1 877,872 - -1.2 877,874 - -1.0 877,924 - +1.1 877,991 + -1.5 878,124 - Atu0883 0.59 -1.0 878,135 + Atu0883 0.65 -2.6 878,143 - Atu0883 0.69 -0.4 878,413 - Atu0884 0.29 +1.9 878,417 + Atu0884 0.29 -1.9 878,543 - Atu0884 0.47 -0.9 878,717 + Atu0884 0.71 +1.8 878,724 - Atu0884 0.72 +0.5 878,740 + Atu0884 0.75 +0.4 878,748 - Atu0884 0.76 +1.2 879,067 + Atu0885 0.45 +1.2 879,094 + Atu0885 0.54 +0.1 879,158 - Atu0885 0.74 -1.7
Or see this region's nucleotide sequence