Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0850 and Atu0851 are separated by 581 nucleotides Atu0851 and Atu0852 are separated by 85 nucleotides Atu0852 and Atu0853 are separated by 149 nucleotides
Atu0850: Atu0850 - ABC transporter, nucleotide binding/ATPase protein, at 850,513 to 851,874
Atu0850
Atu0851: Atu0851 - hypothetical protein, at 852,456 to 852,878
Atu0851
Atu0852: Atu0852 - transcriptional regulator, MarR family, at 852,964 to 853,410
Atu0852
Atu0853: Atu0853 - hypothetical protein, at 853,560 to 854,288
Atu0853
Position (kb) 852
853 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.485 kb on + strand, within Atu0850 at 851.515 kb on - strand, within Atu0850 at 851.547 kb on - strand, within Atu0850 at 851.613 kb on + strand, within Atu0850 at 851.621 kb on - strand, within Atu0850 at 851.623 kb on + strand, within Atu0850 at 851.738 kb on + strand at 851.766 kb on - strand at 851.779 kb on - strand at 851.890 kb on + strand at 851.906 kb on - strand at 852.062 kb on - strand at 852.162 kb on - strand at 852.165 kb on + strand at 852.174 kb on - strand at 852.211 kb on + strand at 852.283 kb on + strand at 852.291 kb on - strand at 852.298 kb on + strand at 852.301 kb on - strand at 852.301 kb on - strand at 852.301 kb on - strand at 852.306 kb on - strand at 852.427 kb on + strand at 852.462 kb on - strand at 852.490 kb on - strand at 852.490 kb on - strand at 852.621 kb on + strand, within Atu0851 at 852.656 kb on + strand, within Atu0851 at 852.664 kb on - strand, within Atu0851 at 852.716 kb on + strand, within Atu0851 at 852.769 kb on + strand, within Atu0851 at 852.806 kb on + strand, within Atu0851 at 852.810 kb on - strand, within Atu0851 at 852.825 kb on - strand, within Atu0851 at 852.918 kb on - strand at 853.016 kb on + strand, within Atu0852 at 853.018 kb on - strand, within Atu0852 at 853.041 kb on - strand, within Atu0852 at 853.052 kb on - strand, within Atu0852 at 853.133 kb on - strand, within Atu0852 at 853.136 kb on + strand, within Atu0852 at 853.172 kb on - strand, within Atu0852 at 853.192 kb on + strand, within Atu0852 at 853.616 kb on + strand at 853.629 kb on + strand at 853.637 kb on - strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.676 kb on + strand, within Atu0853 at 853.678 kb on + strand, within Atu0853 at 853.679 kb on - strand, within Atu0853 at 853.697 kb on + strand, within Atu0853 at 853.705 kb on - strand, within Atu0853 at 853.808 kb on - strand, within Atu0853
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 851,485 + Atu0850 0.71 +0.8 851,515 - Atu0850 0.74 +0.2 851,547 - Atu0850 0.76 -0.6 851,613 + Atu0850 0.81 -0.5 851,621 - Atu0850 0.81 -0.7 851,623 + Atu0850 0.81 +0.7 851,738 + -1.2 851,766 - -0.3 851,779 - -0.9 851,890 + -1.2 851,906 - +0.3 852,062 - -0.3 852,162 - +1.5 852,165 + -0.6 852,174 - -1.9 852,211 + -1.6 852,283 + +0.6 852,291 - +0.8 852,298 + -0.8 852,301 - -1.1 852,301 - +0.2 852,301 - +0.3 852,306 - +0.4 852,427 + +0.5 852,462 - -0.2 852,490 - +0.5 852,490 - +0.2 852,621 + Atu0851 0.39 +1.4 852,656 + Atu0851 0.47 +1.1 852,664 - Atu0851 0.49 +2.7 852,716 + Atu0851 0.61 -0.7 852,769 + Atu0851 0.74 -0.5 852,806 + Atu0851 0.83 -1.4 852,810 - Atu0851 0.84 -0.4 852,825 - Atu0851 0.87 -0.2 852,918 - -1.4 853,016 + Atu0852 0.12 +0.1 853,018 - Atu0852 0.12 +0.1 853,041 - Atu0852 0.17 -0.1 853,052 - Atu0852 0.20 -0.3 853,133 - Atu0852 0.38 +0.9 853,136 + Atu0852 0.38 +0.8 853,172 - Atu0852 0.47 -2.7 853,192 + Atu0852 0.51 +0.7 853,616 + -0.0 853,629 + -2.5 853,637 - Atu0853 0.11 -1.3 853,676 + Atu0853 0.16 +0.6 853,676 + Atu0853 0.16 +0.1 853,676 + Atu0853 0.16 -0.4 853,678 + Atu0853 0.16 -0.7 853,679 - Atu0853 0.16 -2.3 853,697 + Atu0853 0.19 +0.4 853,705 - Atu0853 0.20 +1.6 853,808 - Atu0853 0.34 +1.2
Or see this region's nucleotide sequence