Strain Fitness in Agrobacterium fabrum C58 around Atu0778

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0775 and Atu0776 overlap by 4 nucleotidesAtu0776 and Atu0777 are separated by 176 nucleotidesAtu0777 and Atu0778 are separated by 14 nucleotidesAtu0778 and Atu0779 are separated by 342 nucleotidesAtu0779 and Atu0780 are separated by 100 nucleotides Atu0775: Atu0775 - homoserine kinase, at 770,874 to 771,842 Atu0775 Atu0776: Atu0776 - ribonuclease H, at 771,839 to 772,279 Atu0776 Atu0777: Atu0777 - hypothetical protein, at 772,456 to 772,764 Atu0777 Atu0778: Atu0778 - hypothetical protein, at 772,779 to 775,319 Atu0778 Atu0779: Atu0779 - peroxiredoxin, at 775,662 to 776,147 Atu0779 Atu0780: Atu0780 - hypothetical protein, at 776,248 to 777,096 Atu0780 Position (kb) 772 773 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 772.254 kb on + strandat 772.262 kb on - strandat 772.292 kb on - strandat 772.309 kb on - strandat 772.318 kb on - strandat 772.482 kb on - strandat 772.595 kb on - strand, within Atu0777at 772.814 kb on + strandat 772.912 kb on - strandat 772.935 kb on + strandat 773.052 kb on + strand, within Atu0778at 773.052 kb on + strand, within Atu0778at 773.060 kb on - strand, within Atu0778at 773.093 kb on + strand, within Atu0778at 773.180 kb on - strand, within Atu0778at 773.204 kb on + strand, within Atu0778at 773.204 kb on + strand, within Atu0778at 773.240 kb on + strand, within Atu0778at 773.370 kb on + strand, within Atu0778at 773.429 kb on - strand, within Atu0778at 773.458 kb on - strand, within Atu0778at 773.489 kb on - strand, within Atu0778at 773.789 kb on - strand, within Atu0778at 773.926 kb on + strand, within Atu0778at 773.926 kb on + strand, within Atu0778at 773.926 kb on + strand, within Atu0778at 773.962 kb on - strand, within Atu0778at 774.023 kb on + strand, within Atu0778at 774.089 kb on + strand, within Atu0778at 774.089 kb on - strand, within Atu0778at 774.111 kb on - strand, within Atu0778at 774.111 kb on - strand, within Atu0778at 774.151 kb on + strand, within Atu0778at 774.159 kb on - strand, within Atu0778at 774.190 kb on - strand, within Atu0778at 774.203 kb on + strand, within Atu0778at 774.271 kb on + strand, within Atu0778at 774.278 kb on + strand, within Atu0778at 774.279 kb on - strand, within Atu0778at 774.307 kb on - strand, within Atu0778at 774.485 kb on - strand, within Atu0778at 774.563 kb on + strand, within Atu0778at 774.749 kb on + strand, within Atu0778at 774.757 kb on - strand, within Atu0778at 774.767 kb on + strand, within Atu0778at 774.806 kb on + strand, within Atu0778at 774.873 kb on - strand, within Atu0778at 774.941 kb on + strand, within Atu0778at 774.941 kb on + strand, within Atu0778at 775.085 kb on + strandat 775.120 kb on + strandat 775.133 kb on - strandat 775.134 kb on + strandat 775.162 kb on - strandat 775.226 kb on + strandat 775.314 kb on + strandat 775.318 kb on + strandat 775.336 kb on + strandat 775.338 kb on + strandat 775.338 kb on + strandat 775.344 kb on - strandat 775.346 kb on - strandat 775.354 kb on + strandat 775.364 kb on + strandat 775.366 kb on + strandat 775.372 kb on - strandat 775.382 kb on - strandat 775.641 kb on + strandat 775.660 kb on + strandat 775.660 kb on + strandat 775.668 kb on - strandat 775.668 kb on - strandat 775.757 kb on + strand, within Atu0779at 775.769 kb on + strand, within Atu0779at 775.770 kb on - strand, within Atu0779at 775.770 kb on - strand, within Atu0779at 775.770 kb on - strand, within Atu0779at 775.776 kb on - strand, within Atu0779at 775.781 kb on + strand, within Atu0779at 775.789 kb on - strand, within Atu0779at 775.827 kb on + strand, within Atu0779at 775.876 kb on + strand, within Atu0779at 775.921 kb on - strand, within Atu0779at 775.936 kb on - strand, within Atu0779at 776.165 kb on - strandat 776.236 kb on + strandat 776.312 kb on - strandat 776.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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772,254 + -0.1
772,262 - -2.4
772,292 - -0.5
772,309 - -2.3
772,318 - -0.2
772,482 - +0.0
772,595 - Atu0777 0.45 -0.8
772,814 + -0.1
772,912 - +4.0
772,935 + -0.1
773,052 + Atu0778 0.11 -0.1
773,052 + Atu0778 0.11 +0.4
773,060 - Atu0778 0.11 +0.5
773,093 + Atu0778 0.12 +0.3
773,180 - Atu0778 0.16 +1.1
773,204 + Atu0778 0.17 -1.7
773,204 + Atu0778 0.17 -3.0
773,240 + Atu0778 0.18 +2.6
773,370 + Atu0778 0.23 -0.2
773,429 - Atu0778 0.26 +0.2
773,458 - Atu0778 0.27 +1.2
773,489 - Atu0778 0.28 -0.8
773,789 - Atu0778 0.40 -1.0
773,926 + Atu0778 0.45 -0.4
773,926 + Atu0778 0.45 +0.6
773,926 + Atu0778 0.45 +1.1
773,962 - Atu0778 0.47 +0.2
774,023 + Atu0778 0.49 +0.5
774,089 + Atu0778 0.52 +0.2
774,089 - Atu0778 0.52 +0.9
774,111 - Atu0778 0.52 -0.5
774,111 - Atu0778 0.52 +0.1
774,151 + Atu0778 0.54 +1.7
774,159 - Atu0778 0.54 -1.1
774,190 - Atu0778 0.56 +0.9
774,203 + Atu0778 0.56 -1.1
774,271 + Atu0778 0.59 +2.1
774,278 + Atu0778 0.59 +0.5
774,279 - Atu0778 0.59 +0.8
774,307 - Atu0778 0.60 -0.3
774,485 - Atu0778 0.67 -1.1
774,563 + Atu0778 0.70 +0.6
774,749 + Atu0778 0.78 -1.3
774,757 - Atu0778 0.78 +0.7
774,767 + Atu0778 0.78 +0.2
774,806 + Atu0778 0.80 -0.5
774,873 - Atu0778 0.82 +0.6
774,941 + Atu0778 0.85 -0.8
774,941 + Atu0778 0.85 -0.4
775,085 + -1.7
775,120 + +1.2
775,133 - -1.6
775,134 + +0.2
775,162 - -0.4
775,226 + -0.0
775,314 + +1.0
775,318 + +0.6
775,336 + -0.5
775,338 + -1.5
775,338 + -0.1
775,344 - +0.0
775,346 - +0.9
775,354 + -1.6
775,364 + -0.7
775,366 + -0.7
775,372 - -0.7
775,382 - +1.5
775,641 + -2.0
775,660 + -0.2
775,660 + +1.0
775,668 - -0.9
775,668 - +0.6
775,757 + Atu0779 0.20 -0.3
775,769 + Atu0779 0.22 -0.6
775,770 - Atu0779 0.22 +0.3
775,770 - Atu0779 0.22 +1.6
775,770 - Atu0779 0.22 +0.6
775,776 - Atu0779 0.23 -0.3
775,781 + Atu0779 0.24 +1.6
775,789 - Atu0779 0.26 -1.5
775,827 + Atu0779 0.34 +0.5
775,876 + Atu0779 0.44 -0.3
775,921 - Atu0779 0.53 +0.2
775,936 - Atu0779 0.56 +0.3
776,165 - +0.2
776,236 + -0.1
776,312 - -0.3
776,312 - +4.6

Or see this region's nucleotide sequence