Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0746 and Atu0747 are separated by 260 nucleotides Atu0747 and Atu0748 are separated by 2 nucleotides Atu0748 and Atu0749 are separated by 25 nucleotides Atu0749 and Atu0750 are separated by 5 nucleotides
Atu0746: Atu0746 - hypothetical protein, at 744,746 to 745,669
Atu0746
Atu0747: Atu0747 - exodeoxyribonuclease small subunit, at 745,930 to 746,184
Atu0747
Atu0748: Atu0748 - deacetylase, at 746,187 to 747,122
Atu0748
Atu0749: Atu0749 - biotin synthesis BioY protein, at 747,148 to 747,711
Atu0749
Atu0750: Atu0750 - ABC transporter, membrane spanning protein, at 747,717 to 748,349
Atu0750
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 745.219 kb on - strand, within Atu0746 at 745.257 kb on - strand, within Atu0746 at 745.272 kb on + strand, within Atu0746 at 745.282 kb on + strand, within Atu0746 at 745.290 kb on - strand, within Atu0746 at 745.612 kb on - strand at 745.665 kb on + strand at 745.725 kb on + strand at 745.796 kb on - strand at 745.816 kb on - strand at 745.816 kb on - strand at 745.841 kb on - strand at 746.069 kb on + strand, within Atu0747 at 746.185 kb on + strand at 746.352 kb on - strand, within Atu0748 at 746.503 kb on + strand, within Atu0748 at 746.582 kb on + strand, within Atu0748 at 746.622 kb on - strand, within Atu0748 at 746.654 kb on + strand, within Atu0748 at 746.662 kb on - strand, within Atu0748 at 746.678 kb on - strand, within Atu0748 at 746.709 kb on - strand, within Atu0748 at 746.719 kb on + strand, within Atu0748 at 746.721 kb on - strand, within Atu0748 at 746.745 kb on + strand, within Atu0748 at 746.869 kb on + strand, within Atu0748 at 746.973 kb on + strand, within Atu0748 at 746.981 kb on - strand, within Atu0748 at 747.074 kb on - strand at 747.091 kb on - strand at 747.254 kb on + strand, within Atu0749 at 747.288 kb on + strand, within Atu0749 at 747.296 kb on - strand, within Atu0749 at 747.418 kb on + strand, within Atu0749 at 747.509 kb on - strand, within Atu0749 at 747.588 kb on - strand, within Atu0749 at 747.603 kb on + strand, within Atu0749 at 747.659 kb on - strand at 747.747 kb on + strand at 747.747 kb on + strand at 747.839 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.891 kb on - strand, within Atu0750 at 747.928 kb on - strand, within Atu0750 at 747.952 kb on + strand, within Atu0750 at 747.960 kb on - strand, within Atu0750 at 747.970 kb on - strand, within Atu0750 at 747.992 kb on + strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.029 kb on + strand, within Atu0750 at 748.050 kb on - strand, within Atu0750 at 748.084 kb on + strand, within Atu0750 at 748.113 kb on + strand, within Atu0750 at 748.121 kb on - strand, within Atu0750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 745,219 - Atu0746 0.51 +0.3 745,257 - Atu0746 0.55 +0.1 745,272 + Atu0746 0.57 -0.5 745,282 + Atu0746 0.58 -0.0 745,290 - Atu0746 0.59 +0.6 745,612 - +0.0 745,665 + +1.6 745,725 + -0.9 745,796 - -0.6 745,816 - -0.3 745,816 - -0.9 745,841 - -0.9 746,069 + Atu0747 0.55 -0.1 746,185 + +0.5 746,352 - Atu0748 0.18 +1.1 746,503 + Atu0748 0.34 -0.4 746,582 + Atu0748 0.42 +2.8 746,622 - Atu0748 0.46 +0.1 746,654 + Atu0748 0.50 +0.5 746,662 - Atu0748 0.51 -0.4 746,678 - Atu0748 0.52 +1.3 746,709 - Atu0748 0.56 +1.3 746,719 + Atu0748 0.57 +0.0 746,721 - Atu0748 0.57 +2.2 746,745 + Atu0748 0.60 +0.6 746,869 + Atu0748 0.73 +0.4 746,973 + Atu0748 0.84 +0.0 746,981 - Atu0748 0.85 +1.2 747,074 - -1.9 747,091 - -0.9 747,254 + Atu0749 0.19 -0.3 747,288 + Atu0749 0.25 +0.7 747,296 - Atu0749 0.26 -1.3 747,418 + Atu0749 0.48 -2.5 747,509 - Atu0749 0.64 +1.9 747,588 - Atu0749 0.78 -1.3 747,603 + Atu0749 0.81 -1.2 747,659 - -2.0 747,747 + -1.4 747,747 + +0.2 747,839 - Atu0750 0.19 -0.6 747,889 - Atu0750 0.27 -0.8 747,889 - Atu0750 0.27 -0.3 747,891 - Atu0750 0.27 -2.8 747,928 - Atu0750 0.33 -0.3 747,952 + Atu0750 0.37 +0.6 747,960 - Atu0750 0.38 +1.0 747,970 - Atu0750 0.40 -2.0 747,992 + Atu0750 0.43 -1.3 748,000 - Atu0750 0.45 -0.2 748,000 - Atu0750 0.45 +1.2 748,029 + Atu0750 0.49 -0.2 748,050 - Atu0750 0.53 -0.7 748,084 + Atu0750 0.58 -1.7 748,113 + Atu0750 0.63 -2.0 748,121 - Atu0750 0.64 +1.2
Or see this region's nucleotide sequence