Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0727 and Atu0728 are separated by 174 nucleotides Atu0728 and Atu0730 are separated by 222 nucleotides Atu0730 and Atu0731 are separated by 60 nucleotides
Atu0727: Atu0727 - ferredoxin I, at 727,575 to 728,507
Atu0727
Atu0728: Atu0728 - hypothetical protein, at 728,682 to 729,143
Atu0728
Atu0730: Atu0730 - hypothetical protein, at 729,366 to 729,890
Atu0730
Atu0731: Atu0731 - divalent cation transporter, at 729,951 to 730,946
Atu0731
Position (kb) 728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 727.736 kb on - strand, within Atu0727 at 727.741 kb on + strand, within Atu0727 at 727.886 kb on - strand, within Atu0727 at 727.946 kb on + strand, within Atu0727 at 727.966 kb on + strand, within Atu0727 at 728.020 kb on + strand, within Atu0727 at 728.033 kb on - strand, within Atu0727 at 728.033 kb on - strand, within Atu0727 at 728.048 kb on + strand, within Atu0727 at 728.056 kb on - strand, within Atu0727 at 728.104 kb on + strand, within Atu0727 at 728.112 kb on - strand, within Atu0727 at 728.244 kb on + strand, within Atu0727 at 728.252 kb on - strand, within Atu0727 at 728.270 kb on + strand, within Atu0727 at 728.307 kb on + strand, within Atu0727 at 728.315 kb on - strand, within Atu0727 at 728.315 kb on - strand, within Atu0727 at 728.452 kb on + strand at 728.489 kb on + strand at 728.559 kb on - strand at 728.614 kb on + strand at 728.621 kb on + strand at 728.622 kb on - strand at 728.622 kb on - strand at 728.622 kb on - strand at 728.791 kb on - strand, within Atu0728 at 728.804 kb on - strand, within Atu0728 at 728.814 kb on + strand, within Atu0728 at 728.842 kb on + strand, within Atu0728 at 729.023 kb on - strand, within Atu0728 at 729.103 kb on - strand at 729.202 kb on + strand at 729.249 kb on + strand at 729.527 kb on - strand, within Atu0730 at 729.624 kb on - strand, within Atu0730 at 729.766 kb on + strand, within Atu0730 at 729.786 kb on + strand, within Atu0730 at 729.823 kb on - strand, within Atu0730 at 729.825 kb on + strand, within Atu0730 at 729.833 kb on - strand, within Atu0730 at 729.846 kb on - strand at 729.877 kb on - strand at 729.914 kb on - strand at 730.045 kb on + strand at 730.058 kb on + strand, within Atu0731 at 730.129 kb on + strand, within Atu0731
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 727,736 - Atu0727 0.17 -0.2 727,741 + Atu0727 0.18 -0.8 727,886 - Atu0727 0.33 -0.4 727,946 + Atu0727 0.40 -1.2 727,966 + Atu0727 0.42 -1.5 728,020 + Atu0727 0.48 -0.8 728,033 - Atu0727 0.49 +0.6 728,033 - Atu0727 0.49 -1.6 728,048 + Atu0727 0.51 -0.5 728,056 - Atu0727 0.52 +1.4 728,104 + Atu0727 0.57 -0.8 728,112 - Atu0727 0.58 -2.2 728,244 + Atu0727 0.72 +0.7 728,252 - Atu0727 0.73 -1.9 728,270 + Atu0727 0.74 -0.1 728,307 + Atu0727 0.78 -0.6 728,315 - Atu0727 0.79 -3.2 728,315 - Atu0727 0.79 -0.1 728,452 + -1.7 728,489 + -0.3 728,559 - +2.3 728,614 + +0.7 728,621 + -1.9 728,622 - -0.5 728,622 - -1.1 728,622 - -1.6 728,791 - Atu0728 0.24 +0.0 728,804 - Atu0728 0.26 +1.1 728,814 + Atu0728 0.29 -0.3 728,842 + Atu0728 0.35 +0.1 729,023 - Atu0728 0.74 -0.7 729,103 - -2.5 729,202 + -0.0 729,249 + -1.6 729,527 - Atu0730 0.31 -1.2 729,624 - Atu0730 0.49 -1.5 729,766 + Atu0730 0.76 +0.1 729,786 + Atu0730 0.80 -0.6 729,823 - Atu0730 0.87 +0.1 729,825 + Atu0730 0.87 -0.8 729,833 - Atu0730 0.89 +0.7 729,846 - +0.2 729,877 - -1.3 729,914 - +1.5 730,045 + +0.5 730,058 + Atu0731 0.11 +0.2 730,129 + Atu0731 0.18 +0.1
Or see this region's nucleotide sequence