Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0610 and Atu0611 are separated by 11 nucleotides Atu0611 and Atu0612 are separated by 4 nucleotides Atu0612 and Atu0613 are separated by 307 nucleotides
Atu0610: Atu0610 - ABC transporter, nucleotide binding/ATPase protein, at 597,569 to 598,726
Atu0610
Atu0611: Atu0611 - ABC transporter, membrane spanning protein, at 598,738 to 599,646
Atu0611
Atu0612: Atu0612 - ABC transporter, membrane spanning protein, at 599,651 to 600,463
Atu0612
Atu0613: Atu0613 - ABC transporter, membrane spanning protein, at 600,771 to 602,351
Atu0613
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.733 kb on - strand at 598.769 kb on + strand at 599.067 kb on - strand, within Atu0611 at 599.207 kb on + strand, within Atu0611 at 599.208 kb on + strand, within Atu0611 at 599.225 kb on - strand, within Atu0611 at 599.243 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.477 kb on + strand, within Atu0611 at 599.563 kb on - strand at 599.601 kb on - strand at 599.637 kb on + strand at 599.645 kb on - strand at 599.645 kb on - strand at 599.656 kb on - strand at 599.723 kb on - strand at 599.745 kb on + strand, within Atu0612 at 599.761 kb on + strand, within Atu0612 at 599.821 kb on - strand, within Atu0612 at 599.899 kb on + strand, within Atu0612 at 599.946 kb on - strand, within Atu0612 at 599.960 kb on - strand, within Atu0612 at 599.973 kb on - strand, within Atu0612 at 600.062 kb on + strand, within Atu0612 at 600.123 kb on + strand, within Atu0612 at 600.127 kb on + strand, within Atu0612 at 600.316 kb on + strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.405 kb on + strand at 600.427 kb on - strand at 600.471 kb on - strand at 600.712 kb on + strand at 600.871 kb on - strand at 600.927 kb on - strand at 601.026 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.057 kb on - strand, within Atu0613 at 601.067 kb on - strand, within Atu0613 at 601.067 kb on - strand, within Atu0613 at 601.288 kb on + strand, within Atu0613 at 601.288 kb on + strand, within Atu0613 at 601.294 kb on - strand, within Atu0613 at 601.414 kb on - strand, within Atu0613
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 598,733 - -0.0 598,769 + +0.3 599,067 - Atu0611 0.36 +0.4 599,207 + Atu0611 0.52 -3.2 599,208 + Atu0611 0.52 -0.2 599,225 - Atu0611 0.54 -2.0 599,243 - Atu0611 0.56 +0.2 599,354 - Atu0611 0.68 -0.2 599,354 - Atu0611 0.68 -3.2 599,354 - Atu0611 0.68 -1.4 599,477 + Atu0611 0.81 -0.9 599,563 - +0.7 599,601 - -0.8 599,637 + -0.7 599,645 - -1.2 599,645 - -0.7 599,656 - -0.9 599,723 - +0.1 599,745 + Atu0612 0.12 -0.6 599,761 + Atu0612 0.14 +0.6 599,821 - Atu0612 0.21 -0.5 599,899 + Atu0612 0.31 +1.1 599,946 - Atu0612 0.36 -2.6 599,960 - Atu0612 0.38 +2.0 599,973 - Atu0612 0.40 -0.6 600,062 + Atu0612 0.51 -2.5 600,123 + Atu0612 0.58 +0.2 600,127 + Atu0612 0.59 +0.7 600,316 + Atu0612 0.82 +0.0 600,367 - Atu0612 0.88 -1.4 600,367 - Atu0612 0.88 -0.0 600,367 - Atu0612 0.88 -2.5 600,405 + +0.4 600,427 - -0.2 600,471 - +0.4 600,712 + -0.2 600,871 - -0.4 600,927 - -2.0 601,026 + Atu0613 0.16 -3.0 601,049 + Atu0613 0.18 +0.1 601,049 + Atu0613 0.18 -2.1 601,049 + Atu0613 0.18 +0.6 601,057 - Atu0613 0.18 -0.6 601,067 - Atu0613 0.19 -1.1 601,067 - Atu0613 0.19 -0.7 601,288 + Atu0613 0.33 +1.3 601,288 + Atu0613 0.33 -0.3 601,294 - Atu0613 0.33 -0.6 601,414 - Atu0613 0.41 -2.0
Or see this region's nucleotide sequence