Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0517 and Atu0518 are separated by 13 nucleotides Atu0518 and Atu0519 overlap by 4 nucleotides
Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687
Atu0517
Atu0518: Atu0518 - chemotaxis methyltransferase, at 508,701 to 509,609
Atu0518
Atu0519: Atu0519 - protein-glutamate methylesterase, at 509,606 to 510,661
Atu0519
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.728 kb on + strand, within Atu0517 at 507.759 kb on - strand, within Atu0517 at 507.778 kb on - strand, within Atu0517 at 507.797 kb on + strand, within Atu0517 at 507.826 kb on - strand, within Atu0517 at 507.842 kb on + strand, within Atu0517 at 507.850 kb on - strand, within Atu0517 at 507.850 kb on - strand, within Atu0517 at 507.907 kb on + strand, within Atu0517 at 507.914 kb on - strand, within Atu0517 at 507.925 kb on + strand, within Atu0517 at 507.943 kb on - strand, within Atu0517 at 508.042 kb on - strand, within Atu0517 at 508.146 kb on + strand, within Atu0517 at 508.235 kb on - strand, within Atu0517 at 508.245 kb on + strand, within Atu0517 at 508.245 kb on + strand, within Atu0517 at 508.250 kb on - strand, within Atu0517 at 508.297 kb on + strand, within Atu0517 at 508.335 kb on - strand, within Atu0517 at 508.341 kb on + strand, within Atu0517 at 508.366 kb on + strand, within Atu0517 at 508.429 kb on - strand, within Atu0517 at 508.435 kb on + strand, within Atu0517 at 508.442 kb on + strand, within Atu0517 at 508.479 kb on + strand at 508.591 kb on + strand at 508.593 kb on + strand at 508.686 kb on + strand at 508.693 kb on + strand at 508.813 kb on - strand, within Atu0518 at 508.845 kb on - strand, within Atu0518 at 508.928 kb on - strand, within Atu0518 at 509.027 kb on - strand, within Atu0518 at 509.034 kb on + strand, within Atu0518 at 509.076 kb on + strand, within Atu0518 at 509.211 kb on + strand, within Atu0518 at 509.224 kb on - strand, within Atu0518 at 509.268 kb on - strand, within Atu0518 at 509.350 kb on + strand, within Atu0518 at 509.357 kb on - strand, within Atu0518 at 509.421 kb on + strand, within Atu0518 at 509.450 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.544 kb on + strand at 509.603 kb on + strand at 509.611 kb on - strand at 509.662 kb on + strand at 509.674 kb on + strand at 509.682 kb on - strand at 509.722 kb on + strand, within Atu0519 at 509.826 kb on - strand, within Atu0519 at 509.937 kb on + strand, within Atu0519 at 509.974 kb on + strand, within Atu0519 at 509.975 kb on + strand, within Atu0519 at 509.982 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.126 kb on + strand, within Atu0519 at 510.215 kb on + strand, within Atu0519 at 510.217 kb on + strand, within Atu0519 at 510.283 kb on + strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.296 kb on - strand, within Atu0519 at 510.330 kb on + strand, within Atu0519 at 510.387 kb on + strand, within Atu0519 at 510.441 kb on + strand, within Atu0519 at 510.469 kb on - strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.521 kb on - strand, within Atu0519 at 510.550 kb on - strand, within Atu0519 at 510.572 kb on - strand at 510.579 kb on + strand at 510.588 kb on + strand at 510.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 507,728 + Atu0517 0.57 +1.2 507,759 - Atu0517 0.58 +0.5 507,778 - Atu0517 0.59 +0.0 507,797 + Atu0517 0.60 -0.1 507,826 - Atu0517 0.61 -1.4 507,842 + Atu0517 0.62 +1.4 507,850 - Atu0517 0.62 -0.3 507,850 - Atu0517 0.62 +0.8 507,907 + Atu0517 0.65 +0.7 507,914 - Atu0517 0.65 +0.9 507,925 + Atu0517 0.66 -0.6 507,943 - Atu0517 0.66 +0.3 508,042 - Atu0517 0.71 +1.0 508,146 + Atu0517 0.76 +0.5 508,235 - Atu0517 0.80 -0.4 508,245 + Atu0517 0.80 -2.7 508,245 + Atu0517 0.80 -1.8 508,250 - Atu0517 0.80 +0.9 508,297 + Atu0517 0.82 -0.6 508,335 - Atu0517 0.84 -0.4 508,341 + Atu0517 0.84 -0.1 508,366 + Atu0517 0.85 -2.3 508,429 - Atu0517 0.88 -0.2 508,435 + Atu0517 0.89 +0.5 508,442 + Atu0517 0.89 +0.2 508,479 + -0.9 508,591 + +0.1 508,593 + +0.3 508,686 + -0.3 508,693 + +0.5 508,813 - Atu0518 0.12 -1.0 508,845 - Atu0518 0.16 -1.1 508,928 - Atu0518 0.25 -1.2 509,027 - Atu0518 0.36 -0.9 509,034 + Atu0518 0.37 +0.2 509,076 + Atu0518 0.41 +0.2 509,211 + Atu0518 0.56 -2.5 509,224 - Atu0518 0.58 +1.2 509,268 - Atu0518 0.62 -0.2 509,350 + Atu0518 0.71 +0.3 509,357 - Atu0518 0.72 -1.2 509,421 + Atu0518 0.79 -1.5 509,450 + Atu0518 0.82 -0.3 509,498 + Atu0518 0.88 +1.0 509,498 + Atu0518 0.88 -1.2 509,498 + Atu0518 0.88 -3.7 509,498 + Atu0518 0.88 -0.2 509,498 + Atu0518 0.88 -1.9 509,506 - Atu0518 0.89 +0.3 509,506 - Atu0518 0.89 -0.7 509,506 - Atu0518 0.89 -0.1 509,544 + +0.1 509,603 + -0.9 509,611 - -0.7 509,662 + +0.3 509,674 + +0.7 509,682 - -2.2 509,722 + Atu0519 0.11 +0.3 509,826 - Atu0519 0.21 +1.9 509,937 + Atu0519 0.31 +0.1 509,974 + Atu0519 0.35 +0.6 509,975 + Atu0519 0.35 +0.1 509,982 - Atu0519 0.36 +0.1 510,083 - Atu0519 0.45 -1.7 510,083 - Atu0519 0.45 -0.2 510,126 + Atu0519 0.49 +0.8 510,215 + Atu0519 0.58 -0.7 510,217 + Atu0519 0.58 +1.0 510,283 + Atu0519 0.64 -0.3 510,291 - Atu0519 0.65 -0.6 510,291 - Atu0519 0.65 -1.0 510,296 - Atu0519 0.65 -0.2 510,330 + Atu0519 0.69 +1.7 510,387 + Atu0519 0.74 +0.7 510,441 + Atu0519 0.79 +0.3 510,469 - Atu0519 0.82 +0.1 510,513 + Atu0519 0.86 -0.1 510,513 + Atu0519 0.86 -0.2 510,521 - Atu0519 0.87 +0.9 510,550 - Atu0519 0.89 -0.2 510,572 - -0.1 510,579 + -1.6 510,588 + -0.7 510,596 + +0.2
Or see this region's nucleotide sequence