Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0436 and Atu0437 overlap by 1 nucleotides Atu0437 and Atu0438 are separated by 1 nucleotides Atu0438 and Atu8122 are separated by 282 nucleotides
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Atu0437: Atu0437 - hypothetical protein, at 433,149 to 433,829
Atu0437
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Atu8122: Atu8122 - hypothetical protein, at 435,142 to 436,047
Atu8122
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 432.850 kb on + strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.858 kb on - strand, within Atu0436 at 432.861 kb on + strand, within Atu0436 at 432.876 kb on - strand, within Atu0436 at 432.878 kb on + strand, within Atu0436 at 433.333 kb on - strand, within Atu0437 at 433.346 kb on - strand, within Atu0437 at 433.516 kb on + strand, within Atu0437 at 433.519 kb on - strand, within Atu0437 at 433.574 kb on + strand, within Atu0437 at 433.633 kb on - strand, within Atu0437 at 433.653 kb on + strand, within Atu0437 at 433.846 kb on - strand at 433.866 kb on - strand at 433.875 kb on + strand at 434.003 kb on + strand, within Atu0438 at 434.013 kb on + strand, within Atu0438 at 434.166 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.354 kb on - strand, within Atu0438 at 434.382 kb on + strand, within Atu0438 at 434.389 kb on + strand, within Atu0438 at 434.392 kb on + strand, within Atu0438 at 434.395 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.418 kb on + strand, within Atu0438 at 434.450 kb on - strand, within Atu0438 at 434.507 kb on + strand, within Atu0438 at 434.573 kb on + strand, within Atu0438 at 434.575 kb on + strand, within Atu0438 at 434.583 kb on - strand, within Atu0438 at 434.600 kb on - strand, within Atu0438 at 434.612 kb on - strand, within Atu0438 at 434.663 kb on + strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.676 kb on - strand, within Atu0438 at 434.708 kb on + strand, within Atu0438 at 434.731 kb on + strand, within Atu0438 at 434.784 kb on - strand at 434.820 kb on + strand at 434.820 kb on + strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.994 kb on + strand at 434.996 kb on + strand at 435.028 kb on + strand at 435.083 kb on - strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.229 kb on - strand at 435.260 kb on - strand, within Atu8122 at 435.446 kb on + strand, within Atu8122 at 435.488 kb on + strand, within Atu8122 at 435.489 kb on + strand, within Atu8122 at 435.688 kb on - strand, within Atu8122 at 435.744 kb on - strand, within Atu8122 at 435.836 kb on + strand, within Atu8122 at 435.857 kb on + strand, within Atu8122
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 432,850 + Atu0436 0.86 -1.2 432,850 + Atu0436 0.86 +0.6 432,858 - Atu0436 0.86 -1.6 432,861 + Atu0436 0.87 -0.6 432,876 - Atu0436 0.87 +1.1 432,878 + Atu0436 0.87 +0.3 433,333 - Atu0437 0.27 -0.9 433,346 - Atu0437 0.29 -0.0 433,516 + Atu0437 0.54 -0.2 433,519 - Atu0437 0.54 +0.4 433,574 + Atu0437 0.62 +2.3 433,633 - Atu0437 0.71 +2.2 433,653 + Atu0437 0.74 -0.2 433,846 - +0.8 433,866 - -0.6 433,875 + -0.2 434,003 + Atu0438 0.17 -0.4 434,013 + Atu0438 0.18 +1.4 434,166 + Atu0438 0.33 +1.1 434,336 + Atu0438 0.49 -0.9 434,336 + Atu0438 0.49 +1.6 434,336 + Atu0438 0.49 +1.2 434,344 - Atu0438 0.50 -0.3 434,344 - Atu0438 0.50 +0.6 434,354 - Atu0438 0.51 -0.2 434,382 + Atu0438 0.54 +1.2 434,389 + Atu0438 0.54 +4.1 434,392 + Atu0438 0.55 +1.5 434,395 - Atu0438 0.55 +0.1 434,400 - Atu0438 0.55 +1.1 434,400 - Atu0438 0.55 -1.9 434,400 - Atu0438 0.55 -0.4 434,418 + Atu0438 0.57 -3.4 434,450 - Atu0438 0.60 -1.1 434,507 + Atu0438 0.66 -1.7 434,573 + Atu0438 0.72 +0.0 434,575 + Atu0438 0.72 -0.4 434,583 - Atu0438 0.73 +0.8 434,600 - Atu0438 0.75 -1.5 434,612 - Atu0438 0.76 -1.3 434,663 + Atu0438 0.81 -2.3 434,671 - Atu0438 0.82 +0.2 434,671 - Atu0438 0.82 -0.9 434,676 - Atu0438 0.82 +1.0 434,708 + Atu0438 0.85 +1.2 434,731 + Atu0438 0.87 +0.0 434,784 - -0.4 434,820 + +0.1 434,820 + -0.2 434,821 - -0.8 434,821 - -1.6 434,821 - +0.1 434,994 + -0.7 434,996 + +0.3 435,028 + +0.4 435,083 - -2.1 435,207 + +0.9 435,207 + -2.5 435,207 + +0.3 435,207 + +1.0 435,207 + +4.3 435,229 - -0.1 435,260 - Atu8122 0.13 +0.3 435,446 + Atu8122 0.34 +2.3 435,488 + Atu8122 0.38 -0.9 435,489 + Atu8122 0.38 -0.7 435,688 - Atu8122 0.60 +0.2 435,744 - Atu8122 0.66 -0.1 435,836 + Atu8122 0.77 +2.0 435,857 + Atu8122 0.79 -0.2
Or see this region's nucleotide sequence