Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0430 and Atu0431 are separated by 72 nucleotides Atu0431 and Atu0432 are separated by 234 nucleotides
Atu0430: Atu0430 - chaperonin (heat shock protein hsp33), at 426,439 to 427,428
Atu0430
Atu0431: Atu0431 - apaG protein, at 427,501 to 427,893
Atu0431
Atu0432: Atu0432 - O-succinylhomoserine sulfhydrylase, at 428,128 to 429,312
Atu0432
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 426.515 kb on + strand at 426.515 kb on + strand at 426.543 kb on + strand, within Atu0430 at 426.543 kb on + strand, within Atu0430 at 426.546 kb on - strand, within Atu0430 at 426.551 kb on - strand, within Atu0430 at 426.553 kb on - strand, within Atu0430 at 426.563 kb on - strand, within Atu0430 at 426.563 kb on - strand, within Atu0430 at 426.622 kb on + strand, within Atu0430 at 426.636 kb on + strand, within Atu0430 at 426.673 kb on + strand, within Atu0430 at 426.690 kb on + strand, within Atu0430 at 426.839 kb on + strand, within Atu0430 at 426.940 kb on - strand, within Atu0430 at 427.155 kb on + strand, within Atu0430 at 427.163 kb on - strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.304 kb on - strand, within Atu0430 at 427.304 kb on - strand, within Atu0430 at 427.340 kb on - strand at 427.534 kb on - strand at 427.617 kb on - strand, within Atu0431 at 427.767 kb on + strand, within Atu0431 at 427.788 kb on + strand, within Atu0431 at 427.894 kb on - strand at 427.894 kb on - strand at 427.897 kb on + strand at 427.936 kb on - strand at 427.942 kb on + strand at 427.950 kb on - strand at 428.011 kb on + strand at 428.019 kb on - strand at 428.077 kb on + strand at 428.093 kb on - strand at 428.103 kb on - strand at 428.139 kb on - strand at 428.152 kb on - strand at 428.246 kb on + strand at 428.262 kb on - strand, within Atu0432 at 428.407 kb on + strand, within Atu0432 at 428.554 kb on - strand, within Atu0432 at 428.555 kb on + strand, within Atu0432 at 428.555 kb on + strand, within Atu0432 at 428.557 kb on + strand, within Atu0432 at 428.557 kb on + strand, within Atu0432 at 428.565 kb on - strand, within Atu0432 at 428.565 kb on - strand, within Atu0432 at 428.660 kb on - strand, within Atu0432 at 428.669 kb on + strand, within Atu0432
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 426,515 + -0.7 426,515 + -0.2 426,543 + Atu0430 0.11 -0.2 426,543 + Atu0430 0.11 -0.9 426,546 - Atu0430 0.11 +1.0 426,551 - Atu0430 0.11 +0.1 426,553 - Atu0430 0.12 +0.3 426,563 - Atu0430 0.13 -0.4 426,563 - Atu0430 0.13 -2.3 426,622 + Atu0430 0.18 -3.0 426,636 + Atu0430 0.20 -1.3 426,673 + Atu0430 0.24 -1.3 426,690 + Atu0430 0.25 -1.0 426,839 + Atu0430 0.40 -0.7 426,940 - Atu0430 0.51 -2.4 427,155 + Atu0430 0.72 -0.7 427,163 - Atu0430 0.73 -0.2 427,296 + Atu0430 0.87 -1.1 427,296 + Atu0430 0.87 -0.3 427,296 + Atu0430 0.87 +1.2 427,304 - Atu0430 0.87 -1.1 427,304 - Atu0430 0.87 +0.5 427,340 - -2.3 427,534 - +0.9 427,617 - Atu0431 0.30 -0.2 427,767 + Atu0431 0.68 -0.0 427,788 + Atu0431 0.73 -0.4 427,894 - +0.1 427,894 - +1.2 427,897 + -0.2 427,936 - -0.2 427,942 + -0.2 427,950 - +3.2 428,011 + -1.6 428,019 - +2.1 428,077 + +1.8 428,093 - +1.5 428,103 - -0.3 428,139 - -0.4 428,152 - -3.0 428,246 + -0.3 428,262 - Atu0432 0.11 +0.2 428,407 + Atu0432 0.24 -0.6 428,554 - Atu0432 0.36 +0.5 428,555 + Atu0432 0.36 +1.3 428,555 + Atu0432 0.36 -0.9 428,557 + Atu0432 0.36 -0.8 428,557 + Atu0432 0.36 -1.9 428,565 - Atu0432 0.37 +0.0 428,565 - Atu0432 0.37 +0.2 428,660 - Atu0432 0.45 +0.7 428,669 + Atu0432 0.46 -2.9
Or see this region's nucleotide sequence