Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0217 and Atu0218 are separated by 14 nucleotides Atu0218 and Atu0219 are separated by 33 nucleotides
Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902
Atu0217
Atu0218: Atu0218 - component of type IV pilus, at 222,917 to 224,392
Atu0218
Atu0219: Atu0219 - components of type IV pilus, at 224,426 to 225,709
Atu0219
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 221.999 kb on + strand, within Atu0217 at 222.054 kb on - strand, within Atu0217 at 222.108 kb on - strand, within Atu0217 at 222.115 kb on - strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.245 kb on - strand, within Atu0217 at 222.360 kb on + strand, within Atu0217 at 222.398 kb on + strand, within Atu0217 at 222.474 kb on - strand, within Atu0217 at 222.485 kb on - strand, within Atu0217 at 222.496 kb on + strand, within Atu0217 at 222.504 kb on - strand, within Atu0217 at 222.524 kb on + strand, within Atu0217 at 222.532 kb on - strand, within Atu0217 at 222.545 kb on + strand, within Atu0217 at 222.595 kb on + strand, within Atu0217 at 222.703 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.784 kb on + strand, within Atu0217 at 222.846 kb on - strand at 222.853 kb on + strand at 222.904 kb on - strand at 222.977 kb on - strand at 222.977 kb on - strand at 223.015 kb on - strand at 223.018 kb on + strand at 223.021 kb on - strand at 223.035 kb on + strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.086 kb on - strand, within Atu0218 at 223.125 kb on - strand, within Atu0218 at 223.129 kb on + strand, within Atu0218 at 223.172 kb on - strand, within Atu0218 at 223.181 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.258 kb on + strand, within Atu0218 at 223.265 kb on - strand, within Atu0218 at 223.284 kb on - strand, within Atu0218 at 223.315 kb on - strand, within Atu0218 at 223.334 kb on - strand, within Atu0218 at 223.459 kb on + strand, within Atu0218 at 223.467 kb on - strand, within Atu0218 at 223.505 kb on + strand, within Atu0218 at 223.507 kb on + strand, within Atu0218 at 223.562 kb on - strand, within Atu0218 at 223.720 kb on + strand, within Atu0218 at 223.728 kb on - strand, within Atu0218 at 223.747 kb on + strand, within Atu0218 at 223.764 kb on - strand, within Atu0218 at 223.780 kb on + strand, within Atu0218 at 223.826 kb on - strand, within Atu0218 at 223.859 kb on - strand, within Atu0218 at 223.999 kb on - strand, within Atu0218 at 224.145 kb on + strand, within Atu0218 at 224.296 kb on + strand at 224.296 kb on + strand at 224.315 kb on - strand at 224.332 kb on + strand at 224.348 kb on - strand at 224.403 kb on + strand at 224.493 kb on - strand at 224.493 kb on - strand at 224.503 kb on - strand at 224.509 kb on - strand at 224.730 kb on + strand, within Atu0219 at 224.821 kb on + strand, within Atu0219 at 224.826 kb on + strand, within Atu0219 at 224.831 kb on + strand, within Atu0219 at 224.851 kb on - strand, within Atu0219 at 224.882 kb on - strand, within Atu0219 at 224.934 kb on - strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.218 kb on + strand, within Atu0219
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 221,999 + Atu0217 0.10 -0.1 222,054 - Atu0217 0.16 -0.7 222,108 - Atu0217 0.21 +0.8 222,115 - Atu0217 0.22 +3.3 222,149 + Atu0217 0.25 +2.7 222,149 + Atu0217 0.25 -0.5 222,245 - Atu0217 0.35 +0.5 222,360 + Atu0217 0.46 +0.1 222,398 + Atu0217 0.50 +1.6 222,474 - Atu0217 0.57 +0.1 222,485 - Atu0217 0.58 -0.1 222,496 + Atu0217 0.60 -0.2 222,504 - Atu0217 0.60 -1.4 222,524 + Atu0217 0.62 +0.3 222,532 - Atu0217 0.63 -0.6 222,545 + Atu0217 0.64 -0.4 222,595 + Atu0217 0.69 -0.3 222,703 + Atu0217 0.80 -0.4 222,745 + Atu0217 0.84 -0.3 222,745 + Atu0217 0.84 +1.0 222,784 + Atu0217 0.88 -0.4 222,846 - -0.3 222,853 + +0.3 222,904 - -0.2 222,977 - -0.8 222,977 - -0.1 223,015 - -1.1 223,018 + -2.3 223,021 - +1.5 223,035 + +1.7 223,043 - -0.9 223,043 - +0.1 223,086 - Atu0218 0.11 +0.5 223,125 - Atu0218 0.14 -0.4 223,129 + Atu0218 0.14 +1.1 223,172 - Atu0218 0.17 +1.5 223,181 + Atu0218 0.18 +0.3 223,209 + Atu0218 0.20 +0.9 223,209 + Atu0218 0.20 -0.5 223,217 - Atu0218 0.20 +1.5 223,217 - Atu0218 0.20 +0.6 223,258 + Atu0218 0.23 -1.4 223,265 - Atu0218 0.24 -0.0 223,284 - Atu0218 0.25 +0.7 223,315 - Atu0218 0.27 -0.4 223,334 - Atu0218 0.28 -1.2 223,459 + Atu0218 0.37 +0.2 223,467 - Atu0218 0.37 +0.9 223,505 + Atu0218 0.40 -0.8 223,507 + Atu0218 0.40 +1.1 223,562 - Atu0218 0.44 +1.8 223,720 + Atu0218 0.54 +0.7 223,728 - Atu0218 0.55 +1.5 223,747 + Atu0218 0.56 -1.2 223,764 - Atu0218 0.57 -0.3 223,780 + Atu0218 0.58 +0.2 223,826 - Atu0218 0.62 -1.4 223,859 - Atu0218 0.64 -1.1 223,999 - Atu0218 0.73 -1.7 224,145 + Atu0218 0.83 +0.1 224,296 + +1.3 224,296 + +0.6 224,315 - +2.3 224,332 + +4.3 224,348 - +0.5 224,403 + -0.8 224,493 - +0.3 224,493 - +0.0 224,503 - +0.5 224,509 - +1.0 224,730 + Atu0219 0.24 -0.7 224,821 + Atu0219 0.31 -0.5 224,826 + Atu0219 0.31 -0.0 224,831 + Atu0219 0.32 -0.5 224,851 - Atu0219 0.33 +0.3 224,882 - Atu0219 0.36 +1.4 224,934 - Atu0219 0.40 +0.2 225,045 + Atu0219 0.48 -1.5 225,045 + Atu0219 0.48 +0.5 225,045 + Atu0219 0.48 -0.2 225,218 + Atu0219 0.62 -0.3
Or see this region's nucleotide sequence