Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0179 and Atu0180 are separated by 1 nucleotides Atu0180 and Atu0181 overlap by 4 nucleotides Atu0181 and Atu0182 are separated by 82 nucleotides
Atu0179: Atu0179 - hypothetical protein, at 182,758 to 183,867
Atu0179
Atu0180: Atu0180 - hypothetical protein, at 183,869 to 184,480
Atu0180
Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938
Atu0181
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 182.948 kb on - strand, within Atu0179 at 182.953 kb on - strand, within Atu0179 at 183.076 kb on - strand, within Atu0179 at 183.088 kb on - strand, within Atu0179 at 183.088 kb on - strand, within Atu0179 at 183.236 kb on - strand, within Atu0179 at 183.446 kb on + strand, within Atu0179 at 183.446 kb on - strand, within Atu0179 at 183.469 kb on - strand, within Atu0179 at 183.479 kb on - strand, within Atu0179 at 183.545 kb on - strand, within Atu0179 at 183.546 kb on - strand, within Atu0179 at 183.566 kb on + strand, within Atu0179 at 183.573 kb on + strand, within Atu0179 at 183.573 kb on + strand, within Atu0179 at 183.623 kb on - strand, within Atu0179 at 183.644 kb on - strand, within Atu0179 at 183.782 kb on + strand at 183.824 kb on + strand at 183.848 kb on + strand at 183.855 kb on - strand at 183.868 kb on - strand at 183.882 kb on + strand at 183.883 kb on - strand at 183.883 kb on - strand at 183.942 kb on - strand, within Atu0180 at 183.948 kb on - strand, within Atu0180 at 183.968 kb on + strand, within Atu0180 at 183.970 kb on + strand, within Atu0180 at 183.983 kb on - strand, within Atu0180 at 183.983 kb on - strand, within Atu0180 at 184.121 kb on - strand, within Atu0180 at 184.158 kb on + strand, within Atu0180 at 184.238 kb on + strand, within Atu0180 at 184.251 kb on + strand, within Atu0180 at 184.259 kb on - strand, within Atu0180 at 184.339 kb on + strand, within Atu0180 at 184.366 kb on + strand, within Atu0180 at 184.400 kb on - strand, within Atu0180 at 184.475 kb on + strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.487 kb on + strand at 184.582 kb on - strand, within Atu0181 at 184.618 kb on - strand, within Atu0181 at 184.694 kb on - strand, within Atu0181 at 184.782 kb on - strand, within Atu0181 at 184.843 kb on + strand, within Atu0181 at 185.086 kb on + strand at 185.086 kb on + strand at 185.220 kb on + strand, within Atu0182 at 185.264 kb on - strand, within Atu0182 at 185.323 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.479 kb on + strand, within Atu0182
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 182,948 - Atu0179 0.17 +0.5 182,953 - Atu0179 0.18 +2.2 183,076 - Atu0179 0.29 +0.6 183,088 - Atu0179 0.30 -0.5 183,088 - Atu0179 0.30 -1.9 183,236 - Atu0179 0.43 +0.8 183,446 + Atu0179 0.62 +2.1 183,446 - Atu0179 0.62 -1.0 183,469 - Atu0179 0.64 -0.3 183,479 - Atu0179 0.65 -1.4 183,545 - Atu0179 0.71 +1.6 183,546 - Atu0179 0.71 +3.0 183,566 + Atu0179 0.73 -0.9 183,573 + Atu0179 0.73 -0.1 183,573 + Atu0179 0.73 +3.3 183,623 - Atu0179 0.78 +0.3 183,644 - Atu0179 0.80 -0.2 183,782 + -1.6 183,824 + -0.4 183,848 + -0.1 183,855 - +2.3 183,868 - +1.4 183,882 + -0.4 183,883 - +0.3 183,883 - -0.2 183,942 - Atu0180 0.12 +0.2 183,948 - Atu0180 0.13 +0.3 183,968 + Atu0180 0.16 -1.1 183,970 + Atu0180 0.17 +1.8 183,983 - Atu0180 0.19 +1.8 183,983 - Atu0180 0.19 -0.2 184,121 - Atu0180 0.41 +0.2 184,158 + Atu0180 0.47 +0.6 184,238 + Atu0180 0.60 -0.1 184,251 + Atu0180 0.62 -0.2 184,259 - Atu0180 0.64 +0.9 184,339 + Atu0180 0.77 +1.0 184,366 + Atu0180 0.81 +0.3 184,400 - Atu0180 0.87 +0.9 184,475 + +0.1 184,483 - -2.1 184,483 - +0.4 184,483 - +0.9 184,487 + +0.5 184,582 - Atu0181 0.23 +0.7 184,618 - Atu0181 0.31 +0.4 184,694 - Atu0181 0.47 +1.0 184,782 - Atu0181 0.66 -0.1 184,843 + Atu0181 0.79 +1.1 185,086 + -0.2 185,086 + +0.5 185,220 + Atu0182 0.27 -0.2 185,264 - Atu0182 0.33 +1.7 185,323 + Atu0182 0.41 +0.1 185,449 + Atu0182 0.58 +0.9 185,449 + Atu0182 0.58 -0.1 185,479 + Atu0182 0.62 -0.2
Or see this region's nucleotide sequence