Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0128 and Atu0129 are separated by 6 nucleotides Atu0129 and Atu0130 are separated by 4 nucleotides Atu0130 and Atu0131 overlap by 1 nucleotides
Atu0128: Atu0128 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 132,566 to 133,669
Atu0128
Atu0129: Atu0129 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 133,676 to 134,647
Atu0129
Atu0130: Atu0130 - cytidine deaminase, at 134,652 to 135,056
Atu0130
Atu0131: Atu0131 - purine nucleoside phosphorylase, at 135,056 to 135,856
Atu0131
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 132.751 kb on + strand, within Atu0128 at 132.751 kb on + strand, within Atu0128 at 132.773 kb on - strand, within Atu0128 at 132.799 kb on + strand, within Atu0128 at 132.807 kb on - strand, within Atu0128 at 132.814 kb on + strand, within Atu0128 at 132.822 kb on - strand, within Atu0128 at 132.825 kb on + strand, within Atu0128 at 132.886 kb on - strand, within Atu0128 at 132.908 kb on - strand, within Atu0128 at 132.986 kb on + strand, within Atu0128 at 133.148 kb on - strand, within Atu0128 at 133.215 kb on - strand, within Atu0128 at 133.224 kb on + strand, within Atu0128 at 133.229 kb on + strand, within Atu0128 at 133.262 kb on - strand, within Atu0128 at 133.271 kb on + strand, within Atu0128 at 133.277 kb on - strand, within Atu0128 at 133.283 kb on - strand, within Atu0128 at 133.474 kb on + strand, within Atu0128 at 133.524 kb on + strand, within Atu0128 at 133.532 kb on - strand, within Atu0128 at 133.595 kb on - strand at 133.671 kb on - strand at 133.741 kb on - strand at 133.881 kb on + strand, within Atu0129 at 133.889 kb on - strand, within Atu0129 at 133.917 kb on + strand, within Atu0129 at 133.990 kb on + strand, within Atu0129 at 134.008 kb on + strand, within Atu0129 at 134.008 kb on + strand, within Atu0129 at 134.013 kb on + strand, within Atu0129 at 134.021 kb on - strand, within Atu0129 at 134.021 kb on - strand, within Atu0129 at 134.023 kb on + strand, within Atu0129 at 134.023 kb on + strand, within Atu0129 at 134.150 kb on + strand, within Atu0129 at 134.150 kb on + strand, within Atu0129 at 134.158 kb on - strand, within Atu0129 at 134.185 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.203 kb on - strand, within Atu0129 at 134.253 kb on - strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.402 kb on - strand, within Atu0129 at 134.416 kb on + strand, within Atu0129 at 134.500 kb on + strand, within Atu0129 at 134.561 kb on + strand at 134.561 kb on + strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.616 kb on - strand at 134.671 kb on + strand at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.860 kb on - strand, within Atu0130 at 135.035 kb on + strand at 135.048 kb on - strand at 135.063 kb on - strand at 135.099 kb on + strand at 135.107 kb on - strand at 135.107 kb on - strand at 135.130 kb on - strand at 135.130 kb on - strand at 135.183 kb on + strand, within Atu0131 at 135.238 kb on + strand, within Atu0131 at 135.266 kb on + strand, within Atu0131 at 135.363 kb on + strand, within Atu0131 at 135.521 kb on + strand, within Atu0131
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 132,751 + Atu0128 0.17 +0.1 132,751 + Atu0128 0.17 -0.1 132,773 - Atu0128 0.19 -0.9 132,799 + Atu0128 0.21 +0.4 132,807 - Atu0128 0.22 +1.1 132,814 + Atu0128 0.22 -0.2 132,822 - Atu0128 0.23 +0.9 132,825 + Atu0128 0.23 -0.0 132,886 - Atu0128 0.29 +0.1 132,908 - Atu0128 0.31 +1.5 132,986 + Atu0128 0.38 +0.2 133,148 - Atu0128 0.53 -0.7 133,215 - Atu0128 0.59 +0.3 133,224 + Atu0128 0.60 +0.3 133,229 + Atu0128 0.60 +0.7 133,262 - Atu0128 0.63 +0.5 133,271 + Atu0128 0.64 +0.2 133,277 - Atu0128 0.64 +1.1 133,283 - Atu0128 0.65 +0.3 133,474 + Atu0128 0.82 -0.6 133,524 + Atu0128 0.87 +0.4 133,532 - Atu0128 0.88 +1.2 133,595 - +1.0 133,671 - -1.4 133,741 - +0.5 133,881 + Atu0129 0.21 -1.4 133,889 - Atu0129 0.22 +2.6 133,917 + Atu0129 0.25 +1.1 133,990 + Atu0129 0.32 -1.2 134,008 + Atu0129 0.34 +0.3 134,008 + Atu0129 0.34 -1.3 134,013 + Atu0129 0.35 -0.9 134,021 - Atu0129 0.35 +0.8 134,021 - Atu0129 0.35 +0.4 134,023 + Atu0129 0.36 -0.7 134,023 + Atu0129 0.36 -0.0 134,150 + Atu0129 0.49 +0.9 134,150 + Atu0129 0.49 +0.6 134,158 - Atu0129 0.50 -2.7 134,185 + Atu0129 0.52 +0.1 134,195 + Atu0129 0.53 +0.5 134,195 + Atu0129 0.53 -3.4 134,203 - Atu0129 0.54 -1.2 134,253 - Atu0129 0.59 -0.5 134,392 + Atu0129 0.74 -1.2 134,392 + Atu0129 0.74 -0.0 134,392 + Atu0129 0.74 +0.6 134,392 + Atu0129 0.74 -0.5 134,402 - Atu0129 0.75 -2.6 134,416 + Atu0129 0.76 +0.8 134,500 + Atu0129 0.85 +0.5 134,561 + +0.1 134,561 + +1.0 134,569 - -1.6 134,569 - -0.1 134,569 - -1.4 134,616 - -0.1 134,671 + -0.9 134,808 + Atu0130 0.39 -0.2 134,808 + Atu0130 0.39 -0.1 134,808 + Atu0130 0.39 +0.2 134,860 - Atu0130 0.51 +2.0 135,035 + -0.1 135,048 - +0.7 135,063 - +0.7 135,099 + +1.3 135,107 - +0.2 135,107 - -0.4 135,130 - +2.9 135,130 - -0.4 135,183 + Atu0131 0.16 -2.6 135,238 + Atu0131 0.23 +0.3 135,266 + Atu0131 0.26 -2.3 135,363 + Atu0131 0.38 -2.7 135,521 + Atu0131 0.58 -0.6
Or see this region's nucleotide sequence