Strain Fitness in Agrobacterium fabrum C58 around Atu0033

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0030 and Atu0031 are separated by 11 nucleotidesAtu0031 and Atu0032 are separated by 125 nucleotidesAtu0032 and Atu0033 overlap by 11 nucleotidesAtu0033 and Atu0034 are separated by 55 nucleotides Atu0030: Atu0030 - phosphocarrier protein HPr, at 33,411 to 33,686 Atu0030 Atu0031: Atu0031 - PTS system, IIA component, at 33,698 to 34,099 Atu0031 Atu0032: Atu0032 - hypothetical protein, at 34,225 to 34,689 Atu0032 Atu0033: Atu0033 - two component sensor kinase, at 34,679 to 36,469 Atu0033 Atu0034: Atu0034 - two component response regulator, at 36,525 to 37,250 Atu0034 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 33.773 kb on + strand, within Atu0031at 34.084 kb on + strandat 34.092 kb on - strandat 34.108 kb on + strandat 34.202 kb on + strandat 34.210 kb on - strandat 34.228 kb on + strandat 34.692 kb on - strandat 36.485 kb on + strandat 37.299 kb on + strandat 37.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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33,773 + Atu0031 0.19 -2.4
34,084 + +1.1
34,092 - -1.7
34,108 + -1.7
34,202 + -0.8
34,210 - +0.0
34,228 + -2.1
34,692 - -0.7
36,485 + -1.0
37,299 + +2.3
37,312 - -0.6

Or see this region's nucleotide sequence