Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5523 and Atu5524 are separated by 1 nucleotides Atu5524 and Atu5525 overlap by 1 nucleotides
Atu5523: Atu5523 - ABC transporter membrane spanning protein (branched chain amino acid), at 515,117 to 516,211
Atu5523
Atu5524: Atu5524 - ABC transporter membrane spanning protein (branched chain amino acid), at 516,213 to 517,109
Atu5524
Atu5525: Atu5525 - ABC transporter nucleotide binding/ATPase (branched chain amino acid), at 517,109 to 518,026
Atu5525
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 515.246 kb on - strand, within Atu5523 at 515.255 kb on - strand, within Atu5523 at 515.255 kb on - strand, within Atu5523 at 515.261 kb on + strand, within Atu5523 at 515.278 kb on - strand, within Atu5523 at 515.287 kb on + strand, within Atu5523 at 515.290 kb on - strand, within Atu5523 at 515.292 kb on + strand, within Atu5523 at 515.302 kb on + strand, within Atu5523 at 515.310 kb on - strand, within Atu5523 at 515.342 kb on - strand, within Atu5523 at 515.348 kb on - strand, within Atu5523 at 515.478 kb on - strand, within Atu5523 at 515.478 kb on - strand, within Atu5523 at 515.509 kb on - strand, within Atu5523 at 515.574 kb on + strand, within Atu5523 at 515.574 kb on + strand, within Atu5523 at 515.582 kb on - strand, within Atu5523 at 515.668 kb on - strand, within Atu5523 at 515.668 kb on - strand, within Atu5523 at 515.836 kb on - strand, within Atu5523 at 515.862 kb on + strand, within Atu5523 at 515.865 kb on - strand, within Atu5523 at 515.881 kb on - strand, within Atu5523 at 516.019 kb on - strand, within Atu5523 at 516.037 kb on + strand, within Atu5523 at 516.037 kb on + strand, within Atu5523 at 516.037 kb on + strand, within Atu5523 at 516.045 kb on - strand, within Atu5523 at 516.045 kb on - strand, within Atu5523 at 516.045 kb on - strand, within Atu5523 at 516.066 kb on - strand, within Atu5523 at 516.087 kb on + strand, within Atu5523 at 516.143 kb on + strand at 516.164 kb on + strand at 516.211 kb on + strand at 516.219 kb on - strand at 516.219 kb on - strand at 516.243 kb on - strand at 516.253 kb on - strand at 516.298 kb on + strand at 516.328 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.538 kb on - strand, within Atu5524 at 516.565 kb on + strand, within Atu5524 at 516.687 kb on + strand, within Atu5524 at 516.687 kb on + strand, within Atu5524 at 516.762 kb on - strand, within Atu5524 at 516.767 kb on + strand, within Atu5524 at 516.775 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.859 kb on - strand, within Atu5524 at 516.926 kb on - strand, within Atu5524 at 516.955 kb on + strand, within Atu5524 at 517.011 kb on - strand, within Atu5524 at 517.014 kb on - strand, within Atu5524 at 517.036 kb on + strand at 517.048 kb on + strand at 517.076 kb on - strand at 517.199 kb on - strand at 517.228 kb on + strand, within Atu5525 at 517.228 kb on + strand, within Atu5525 at 517.247 kb on + strand, within Atu5525 at 517.258 kb on + strand, within Atu5525 at 517.258 kb on + strand, within Atu5525 at 517.266 kb on - strand, within Atu5525 at 517.269 kb on + strand, within Atu5525 at 517.287 kb on - strand, within Atu5525 at 517.337 kb on - strand, within Atu5525 at 517.390 kb on + strand, within Atu5525 at 517.390 kb on + strand, within Atu5525 at 517.422 kb on - strand, within Atu5525 at 517.434 kb on + strand, within Atu5525 at 517.442 kb on - strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.589 kb on - strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.641 kb on - strand, within Atu5525 at 517.791 kb on - strand, within Atu5525 at 517.835 kb on + strand, within Atu5525 at 517.835 kb on + strand, within Atu5525 at 517.843 kb on - strand, within Atu5525 at 517.882 kb on + strand, within Atu5525 at 517.882 kb on + strand, within Atu5525 at 517.910 kb on - strand, within Atu5525 at 517.919 kb on + strand, within Atu5525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 515,246 - Atu5523 0.12 +0.9 515,255 - Atu5523 0.13 +0.6 515,255 - Atu5523 0.13 -0.3 515,261 + Atu5523 0.13 -0.8 515,278 - Atu5523 0.15 +2.9 515,287 + Atu5523 0.16 -1.4 515,290 - Atu5523 0.16 +1.0 515,292 + Atu5523 0.16 -1.1 515,302 + Atu5523 0.17 -0.7 515,310 - Atu5523 0.18 -0.2 515,342 - Atu5523 0.21 -0.1 515,348 - Atu5523 0.21 +0.6 515,478 - Atu5523 0.33 +0.1 515,478 - Atu5523 0.33 -0.4 515,509 - Atu5523 0.36 -0.3 515,574 + Atu5523 0.42 +0.4 515,574 + Atu5523 0.42 +0.9 515,582 - Atu5523 0.42 -2.2 515,668 - Atu5523 0.50 +2.0 515,668 - Atu5523 0.50 -0.5 515,836 - Atu5523 0.66 +1.9 515,862 + Atu5523 0.68 +0.1 515,865 - Atu5523 0.68 -0.2 515,881 - Atu5523 0.70 +0.7 516,019 - Atu5523 0.82 +1.0 516,037 + Atu5523 0.84 +0.2 516,037 + Atu5523 0.84 +0.6 516,037 + Atu5523 0.84 +0.2 516,045 - Atu5523 0.85 -2.0 516,045 - Atu5523 0.85 +1.1 516,045 - Atu5523 0.85 +0.0 516,066 - Atu5523 0.87 +0.5 516,087 + Atu5523 0.89 +0.2 516,143 + +0.9 516,164 + -0.4 516,211 + -0.7 516,219 - -1.3 516,219 - +0.3 516,243 - -0.3 516,253 - +0.1 516,298 + +2.3 516,328 + Atu5524 0.13 -0.4 516,475 + Atu5524 0.29 +0.8 516,475 + Atu5524 0.29 +1.8 516,475 + Atu5524 0.29 +0.1 516,475 + Atu5524 0.29 -0.9 516,475 + Atu5524 0.29 -0.1 516,475 + Atu5524 0.29 +0.3 516,475 + Atu5524 0.29 -0.1 516,475 + Atu5524 0.29 +0.5 516,475 + Atu5524 0.29 +0.8 516,475 + Atu5524 0.29 -0.1 516,475 + Atu5524 0.29 -0.5 516,475 + Atu5524 0.29 -0.3 516,475 + Atu5524 0.29 +0.1 516,475 + Atu5524 0.29 -0.7 516,475 + Atu5524 0.29 +3.5 516,483 - Atu5524 0.30 -0.2 516,483 - Atu5524 0.30 -1.0 516,483 - Atu5524 0.30 -0.0 516,483 - Atu5524 0.30 +0.8 516,483 - Atu5524 0.30 +0.0 516,483 - Atu5524 0.30 -0.3 516,483 - Atu5524 0.30 +0.0 516,483 - Atu5524 0.30 +0.5 516,483 - Atu5524 0.30 -2.2 516,483 - Atu5524 0.30 -1.3 516,483 - Atu5524 0.30 -1.6 516,483 - Atu5524 0.30 +1.6 516,483 - Atu5524 0.30 +0.1 516,483 - Atu5524 0.30 +0.7 516,530 + Atu5524 0.35 -0.9 516,530 + Atu5524 0.35 -0.4 516,530 + Atu5524 0.35 +1.7 516,538 - Atu5524 0.36 -0.8 516,565 + Atu5524 0.39 +0.0 516,687 + Atu5524 0.53 -0.3 516,687 + Atu5524 0.53 -0.3 516,762 - Atu5524 0.61 -0.1 516,767 + Atu5524 0.62 -0.8 516,775 + Atu5524 0.63 +0.2 516,805 + Atu5524 0.66 -0.8 516,805 + Atu5524 0.66 +2.0 516,805 + Atu5524 0.66 -1.2 516,805 + Atu5524 0.66 -2.1 516,805 + Atu5524 0.66 +0.3 516,813 - Atu5524 0.67 -0.5 516,813 - Atu5524 0.67 -1.1 516,813 - Atu5524 0.67 +0.9 516,813 - Atu5524 0.67 -2.3 516,859 - Atu5524 0.72 -2.7 516,926 - Atu5524 0.79 +0.6 516,955 + Atu5524 0.83 -0.1 517,011 - Atu5524 0.89 -1.6 517,014 - Atu5524 0.89 -3.0 517,036 + -0.9 517,048 + +0.4 517,076 - +0.0 517,199 - -0.4 517,228 + Atu5525 0.13 +0.9 517,228 + Atu5525 0.13 -1.1 517,247 + Atu5525 0.15 -2.7 517,258 + Atu5525 0.16 -3.3 517,258 + Atu5525 0.16 +0.3 517,266 - Atu5525 0.17 +1.7 517,269 + Atu5525 0.17 +0.8 517,287 - Atu5525 0.19 +1.1 517,337 - Atu5525 0.25 +0.7 517,390 + Atu5525 0.31 -0.0 517,390 + Atu5525 0.31 -1.5 517,422 - Atu5525 0.34 +0.2 517,434 + Atu5525 0.35 +0.5 517,442 - Atu5525 0.36 +0.9 517,581 + Atu5525 0.51 -0.1 517,581 + Atu5525 0.51 -0.0 517,581 + Atu5525 0.51 -0.1 517,589 - Atu5525 0.52 +1.2 517,623 + Atu5525 0.56 -2.7 517,623 + Atu5525 0.56 +1.1 517,623 + Atu5525 0.56 -0.2 517,623 + Atu5525 0.56 +0.3 517,623 + Atu5525 0.56 -0.4 517,623 + Atu5525 0.56 +0.1 517,631 - Atu5525 0.57 -1.0 517,631 - Atu5525 0.57 -0.5 517,631 - Atu5525 0.57 -0.6 517,631 - Atu5525 0.57 -0.2 517,631 - Atu5525 0.57 -0.7 517,631 - Atu5525 0.57 +1.4 517,631 - Atu5525 0.57 -2.5 517,641 - Atu5525 0.58 -0.9 517,791 - Atu5525 0.74 -0.6 517,835 + Atu5525 0.79 +0.4 517,835 + Atu5525 0.79 -0.4 517,843 - Atu5525 0.80 +1.0 517,882 + Atu5525 0.84 +0.1 517,882 + Atu5525 0.84 +0.1 517,910 - Atu5525 0.87 +0.3 517,919 + Atu5525 0.88 +0.1
Or see this region's nucleotide sequence