Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3719 and Atu3720 overlap by 1 nucleotides Atu3720 and Atu3721 are separated by 35 nucleotides Atu3721 and Atu3722 are separated by 52 nucleotides
Atu3719: Atu3719 - MutT/nudix family protein, at 800,919 to 801,446
Atu3719
Atu3720: Atu3720 - hypothetical protein, at 801,446 to 802,024
Atu3720
Atu3721: Atu3721 - hypothetical protein, at 802,060 to 802,278
Atu3721
Atu3722: Atu3722 - Holliday junction DNA helicase RuvB, at 802,331 to 803,371
Atu3722
Position (kb) 802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.165 kb on - strand, within Atu3719 at 801.196 kb on + strand, within Atu3719 at 801.196 kb on + strand, within Atu3719 at 801.204 kb on - strand, within Atu3719 at 801.204 kb on - strand, within Atu3719 at 801.204 kb on - strand, within Atu3719 at 801.204 kb on - strand, within Atu3719 at 801.207 kb on - strand, within Atu3719 at 801.222 kb on - strand, within Atu3719 at 801.222 kb on - strand, within Atu3719 at 801.227 kb on - strand, within Atu3719 at 801.229 kb on - strand, within Atu3719 at 801.443 kb on + strand at 801.451 kb on - strand at 801.456 kb on - strand at 801.521 kb on - strand, within Atu3720 at 801.581 kb on - strand, within Atu3720 at 801.652 kb on + strand, within Atu3720 at 801.665 kb on - strand, within Atu3720 at 801.681 kb on + strand, within Atu3720 at 801.728 kb on + strand, within Atu3720 at 801.743 kb on + strand, within Atu3720 at 801.747 kb on + strand, within Atu3720 at 801.764 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.869 kb on - strand, within Atu3720 at 801.869 kb on - strand, within Atu3720 at 801.877 kb on + strand, within Atu3720 at 801.877 kb on + strand, within Atu3720 at 801.882 kb on + strand, within Atu3720 at 801.951 kb on - strand, within Atu3720 at 801.956 kb on - strand, within Atu3720 at 802.003 kb on + strand at 802.022 kb on - strand at 802.106 kb on + strand, within Atu3721 at 802.129 kb on + strand, within Atu3721 at 802.290 kb on + strand at 802.358 kb on - strand at 802.764 kb on + strand, within Atu3722
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 801,165 - Atu3719 0.47 -0.7 801,196 + Atu3719 0.52 +1.4 801,196 + Atu3719 0.52 -0.3 801,204 - Atu3719 0.54 +0.1 801,204 - Atu3719 0.54 +0.7 801,204 - Atu3719 0.54 -0.7 801,204 - Atu3719 0.54 +0.3 801,207 - Atu3719 0.55 -1.0 801,222 - Atu3719 0.57 -0.1 801,222 - Atu3719 0.57 +0.5 801,227 - Atu3719 0.58 +1.1 801,229 - Atu3719 0.59 +0.1 801,443 + -0.2 801,451 - -0.7 801,456 - -1.0 801,521 - Atu3720 0.13 -0.2 801,581 - Atu3720 0.23 -0.3 801,652 + Atu3720 0.36 -1.1 801,665 - Atu3720 0.38 -1.0 801,681 + Atu3720 0.41 +0.5 801,728 + Atu3720 0.49 +0.2 801,743 + Atu3720 0.51 +1.0 801,747 + Atu3720 0.52 +0.4 801,764 + Atu3720 0.55 +1.1 801,861 + Atu3720 0.72 -0.7 801,861 + Atu3720 0.72 +0.4 801,861 + Atu3720 0.72 +1.1 801,861 + Atu3720 0.72 -0.8 801,869 - Atu3720 0.73 +1.1 801,869 - Atu3720 0.73 -0.1 801,877 + Atu3720 0.74 -0.2 801,877 + Atu3720 0.74 +2.2 801,882 + Atu3720 0.75 +0.3 801,951 - Atu3720 0.87 -1.1 801,956 - Atu3720 0.88 +0.0 802,003 + -2.0 802,022 - -0.6 802,106 + Atu3721 0.21 -1.1 802,129 + Atu3721 0.32 -1.3 802,290 + -0.2 802,358 - -0.0 802,764 + Atu3722 0.42 +0.7
Or see this region's nucleotide sequence