Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3259 and Atu3260 are separated by 53 nucleotides Atu3260 and Atu3261 are separated by 16 nucleotides
Atu3259: Atu3259 - dehydrogenase, at 275,818 to 277,329
Atu3259
Atu3260: Atu3260 - ABC transporter substrate binding protein, at 277,383 to 278,381
Atu3260
Atu3261: Atu3261 - ABC transporter permease, at 278,398 to 280,218
Atu3261
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.459 kb on + strand, within Atu3259 at 276.467 kb on - strand, within Atu3259 at 276.510 kb on + strand, within Atu3259 at 276.510 kb on + strand, within Atu3259 at 276.518 kb on - strand, within Atu3259 at 276.518 kb on - strand, within Atu3259 at 276.571 kb on + strand, within Atu3259 at 276.606 kb on + strand, within Atu3259 at 276.675 kb on + strand, within Atu3259 at 276.675 kb on + strand, within Atu3259 at 276.677 kb on - strand, within Atu3259 at 276.683 kb on - strand, within Atu3259 at 276.683 kb on - strand, within Atu3259 at 276.706 kb on + strand, within Atu3259 at 276.706 kb on + strand, within Atu3259 at 276.808 kb on - strand, within Atu3259 at 276.899 kb on + strand, within Atu3259 at 276.907 kb on - strand, within Atu3259 at 276.914 kb on + strand, within Atu3259 at 276.922 kb on - strand, within Atu3259 at 276.984 kb on - strand, within Atu3259 at 277.002 kb on + strand, within Atu3259 at 277.006 kb on - strand, within Atu3259 at 277.012 kb on + strand, within Atu3259 at 277.142 kb on + strand, within Atu3259 at 277.172 kb on + strand, within Atu3259 at 277.180 kb on - strand at 277.180 kb on - strand at 277.205 kb on + strand at 277.388 kb on - strand at 277.394 kb on + strand at 277.407 kb on - strand at 277.459 kb on + strand at 277.467 kb on - strand at 277.467 kb on - strand at 277.467 kb on - strand at 277.504 kb on + strand, within Atu3260 at 277.504 kb on + strand, within Atu3260 at 277.504 kb on + strand, within Atu3260 at 277.612 kb on + strand, within Atu3260 at 277.744 kb on + strand, within Atu3260 at 277.783 kb on - strand, within Atu3260 at 277.805 kb on - strand, within Atu3260 at 277.810 kb on - strand, within Atu3260 at 277.842 kb on + strand, within Atu3260 at 277.877 kb on + strand, within Atu3260 at 278.012 kb on + strand, within Atu3260 at 278.078 kb on - strand, within Atu3260 at 278.097 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.108 kb on - strand, within Atu3260 at 278.118 kb on - strand, within Atu3260 at 278.138 kb on + strand, within Atu3260 at 278.163 kb on - strand, within Atu3260 at 278.284 kb on + strand at 278.292 kb on - strand at 278.309 kb on + strand at 278.458 kb on + strand at 278.535 kb on + strand at 278.538 kb on + strand at 278.646 kb on - strand, within Atu3261 at 278.698 kb on - strand, within Atu3261 at 278.874 kb on - strand, within Atu3261 at 278.891 kb on + strand, within Atu3261 at 278.910 kb on - strand, within Atu3261 at 278.936 kb on + strand, within Atu3261 at 279.016 kb on + strand, within Atu3261 at 279.176 kb on + strand, within Atu3261 at 279.376 kb on - strand, within Atu3261
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 276,459 + Atu3259 0.42 +2.2 276,467 - Atu3259 0.43 +1.5 276,510 + Atu3259 0.46 -0.1 276,510 + Atu3259 0.46 -1.0 276,518 - Atu3259 0.46 -0.6 276,518 - Atu3259 0.46 -0.4 276,571 + Atu3259 0.50 -1.5 276,606 + Atu3259 0.52 +2.5 276,675 + Atu3259 0.57 -0.2 276,675 + Atu3259 0.57 +0.1 276,677 - Atu3259 0.57 +1.2 276,683 - Atu3259 0.57 -1.3 276,683 - Atu3259 0.57 -3.3 276,706 + Atu3259 0.59 +0.5 276,706 + Atu3259 0.59 -0.3 276,808 - Atu3259 0.65 -0.5 276,899 + Atu3259 0.71 +0.2 276,907 - Atu3259 0.72 -0.3 276,914 + Atu3259 0.72 -0.5 276,922 - Atu3259 0.73 -1.3 276,984 - Atu3259 0.77 +0.6 277,002 + Atu3259 0.78 +0.3 277,006 - Atu3259 0.79 -1.0 277,012 + Atu3259 0.79 -0.6 277,142 + Atu3259 0.88 -0.9 277,172 + Atu3259 0.90 -2.3 277,180 - -0.0 277,180 - -1.2 277,205 + +0.3 277,388 - -0.6 277,394 + +0.3 277,407 - +0.5 277,459 + +0.3 277,467 - -0.5 277,467 - -3.2 277,467 - -0.6 277,504 + Atu3260 0.12 -0.2 277,504 + Atu3260 0.12 -0.0 277,504 + Atu3260 0.12 -0.2 277,612 + Atu3260 0.23 +0.4 277,744 + Atu3260 0.36 -0.5 277,783 - Atu3260 0.40 +0.1 277,805 - Atu3260 0.42 +0.6 277,810 - Atu3260 0.43 -0.6 277,842 + Atu3260 0.46 +0.3 277,877 + Atu3260 0.49 +0.3 278,012 + Atu3260 0.63 +0.1 278,078 - Atu3260 0.70 -0.7 278,097 - Atu3260 0.71 -0.1 278,108 - Atu3260 0.73 +0.6 278,108 - Atu3260 0.73 -0.5 278,108 - Atu3260 0.73 -0.6 278,108 - Atu3260 0.73 -1.4 278,118 - Atu3260 0.74 +1.3 278,138 + Atu3260 0.76 -0.4 278,163 - Atu3260 0.78 -0.3 278,284 + -1.3 278,292 - +1.2 278,309 + +0.6 278,458 + +0.8 278,535 + -0.5 278,538 + +0.4 278,646 - Atu3261 0.14 -3.2 278,698 - Atu3261 0.16 +2.7 278,874 - Atu3261 0.26 -1.0 278,891 + Atu3261 0.27 +0.4 278,910 - Atu3261 0.28 -1.0 278,936 + Atu3261 0.30 -0.7 279,016 + Atu3261 0.34 -0.4 279,176 + Atu3261 0.43 +0.2 279,376 - Atu3261 0.54 +0.4
Or see this region's nucleotide sequence