Strain Fitness in Agrobacterium fabrum C58 around Atu0843

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0841 and Atu0842 are separated by 37 nucleotidesAtu0842 and Atu0843 are separated by 163 nucleotidesAtu0843 and Atu0844 are separated by 168 nucleotides Atu0841: Atu0841 - hypothetical protein, at 841,513 to 842,478 Atu0841 Atu0842: Atu0842 - hypothetical protein, at 842,516 to 843,304 Atu0842 Atu0843: Atu0843 - P type cation (metal) transporter, ATPase component, at 843,468 to 846,185 Atu0843 Atu0844: Atu0844 - hypothetical protein, at 846,354 to 847,262 Atu0844 Position (kb) 843 844 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 842.506 kb on - strandat 842.522 kb on - strandat 842.777 kb on - strand, within Atu0842at 843.005 kb on + strand, within Atu0842at 843.055 kb on + strand, within Atu0842at 843.268 kb on + strandat 843.298 kb on + strandat 843.502 kb on + strandat 843.508 kb on + strandat 843.589 kb on + strandat 843.597 kb on - strandat 843.752 kb on - strand, within Atu0843at 843.814 kb on - strand, within Atu0843at 843.879 kb on + strand, within Atu0843at 843.881 kb on + strand, within Atu0843at 843.888 kb on + strand, within Atu0843at 843.895 kb on - strand, within Atu0843at 843.970 kb on + strand, within Atu0843at 843.993 kb on + strand, within Atu0843at 844.036 kb on + strand, within Atu0843at 844.071 kb on + strand, within Atu0843at 844.165 kb on + strand, within Atu0843at 844.168 kb on + strand, within Atu0843at 844.213 kb on - strand, within Atu0843at 844.313 kb on + strand, within Atu0843at 844.383 kb on - strand, within Atu0843at 844.444 kb on + strand, within Atu0843at 844.498 kb on + strand, within Atu0843at 844.498 kb on + strand, within Atu0843at 844.498 kb on + strand, within Atu0843at 844.535 kb on + strand, within Atu0843at 844.535 kb on + strand, within Atu0843at 844.541 kb on + strand, within Atu0843at 844.543 kb on - strand, within Atu0843at 844.594 kb on + strand, within Atu0843at 844.636 kb on - strand, within Atu0843at 844.639 kb on + strand, within Atu0843at 844.647 kb on + strand, within Atu0843at 844.681 kb on + strand, within Atu0843at 844.750 kb on - strand, within Atu0843at 844.854 kb on + strand, within Atu0843at 844.871 kb on - strand, within Atu0843at 844.893 kb on - strand, within Atu0843at 844.937 kb on - strand, within Atu0843at 844.955 kb on - strand, within Atu0843at 844.966 kb on + strand, within Atu0843at 845.064 kb on + strand, within Atu0843at 845.109 kb on - strand, within Atu0843at 845.148 kb on + strand, within Atu0843at 845.173 kb on + strand, within Atu0843at 845.228 kb on + strand, within Atu0843at 845.253 kb on + strand, within Atu0843at 845.261 kb on - strand, within Atu0843at 845.295 kb on + strand, within Atu0843at 845.320 kb on - strand, within Atu0843at 845.330 kb on - strand, within Atu0843at 845.348 kb on + strand, within Atu0843at 845.363 kb on - strand, within Atu0843at 845.424 kb on - strand, within Atu0843at 845.434 kb on - strand, within Atu0843at 845.436 kb on + strand, within Atu0843at 845.490 kb on - strand, within Atu0843at 845.587 kb on + strand, within Atu0843at 845.668 kb on + strand, within Atu0843at 845.671 kb on - strand, within Atu0843at 845.689 kb on + strand, within Atu0843at 845.689 kb on + strand, within Atu0843at 845.738 kb on + strand, within Atu0843at 845.763 kb on + strand, within Atu0843at 845.794 kb on - strand, within Atu0843at 845.927 kb on - strandat 846.006 kb on - strandat 846.074 kb on - strandat 846.095 kb on + strandat 846.095 kb on + strandat 846.356 kb on - strandat 846.396 kb on + strandat 846.406 kb on - strandat 846.411 kb on - strandat 846.465 kb on - strand, within Atu0844at 846.581 kb on + strand, within Atu0844at 846.581 kb on + strand, within Atu0844at 846.589 kb on - strand, within Atu0844at 846.633 kb on - strand, within Atu0844at 846.655 kb on + strand, within Atu0844at 846.656 kb on - strand, within Atu0844at 846.661 kb on - strand, within Atu0844at 846.663 kb on - strand, within Atu0844at 846.699 kb on - strand, within Atu0844at 846.727 kb on - strand, within Atu0844at 846.799 kb on + strand, within Atu0844at 846.805 kb on + strand, within Atu0844at 846.852 kb on + strand, within Atu0844at 846.856 kb on + strand, within Atu0844at 846.941 kb on - strand, within Atu0844at 846.968 kb on - strand, within Atu0844at 847.007 kb on + strand, within Atu0844at 847.027 kb on - strand, within Atu0844at 847.073 kb on - strand, within Atu0844

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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842,506 - -1.3
842,522 - -1.0
842,777 - Atu0842 0.33 +0.4
843,005 + Atu0842 0.62 -1.9
843,055 + Atu0842 0.68 +0.4
843,268 + -0.4
843,298 + -0.4
843,502 + -2.3
843,508 + -1.2
843,589 + -1.2
843,597 - -2.0
843,752 - Atu0843 0.10 -1.9
843,814 - Atu0843 0.13 +1.7
843,879 + Atu0843 0.15 -4.7
843,881 + Atu0843 0.15 -2.1
843,888 + Atu0843 0.15 -1.6
843,895 - Atu0843 0.16 -2.3
843,970 + Atu0843 0.18 -2.9
843,993 + Atu0843 0.19 +0.4
844,036 + Atu0843 0.21 -1.0
844,071 + Atu0843 0.22 -2.4
844,165 + Atu0843 0.26 -0.3
844,168 + Atu0843 0.26 -2.1
844,213 - Atu0843 0.27 -0.6
844,313 + Atu0843 0.31 -2.1
844,383 - Atu0843 0.34 -2.3
844,444 + Atu0843 0.36 -2.1
844,498 + Atu0843 0.38 +0.7
844,498 + Atu0843 0.38 +1.7
844,498 + Atu0843 0.38 -1.2
844,535 + Atu0843 0.39 -2.7
844,535 + Atu0843 0.39 -2.5
844,541 + Atu0843 0.39 -2.5
844,543 - Atu0843 0.40 -0.4
844,594 + Atu0843 0.41 -0.4
844,636 - Atu0843 0.43 -0.3
844,639 + Atu0843 0.43 -2.2
844,647 + Atu0843 0.43 -2.4
844,681 + Atu0843 0.45 -1.3
844,750 - Atu0843 0.47 -1.2
844,854 + Atu0843 0.51 +0.7
844,871 - Atu0843 0.52 -1.7
844,893 - Atu0843 0.52 -0.5
844,937 - Atu0843 0.54 -0.4
844,955 - Atu0843 0.55 -1.4
844,966 + Atu0843 0.55 -4.0
845,064 + Atu0843 0.59 -1.3
845,109 - Atu0843 0.60 -2.9
845,148 + Atu0843 0.62 +0.4
845,173 + Atu0843 0.63 -2.1
845,228 + Atu0843 0.65 -1.1
845,253 + Atu0843 0.66 -2.2
845,261 - Atu0843 0.66 -1.0
845,295 + Atu0843 0.67 +1.1
845,320 - Atu0843 0.68 -3.1
845,330 - Atu0843 0.69 -2.7
845,348 + Atu0843 0.69 -1.7
845,363 - Atu0843 0.70 +2.5
845,424 - Atu0843 0.72 -2.1
845,434 - Atu0843 0.72 +0.1
845,436 + Atu0843 0.72 -0.4
845,490 - Atu0843 0.74 -2.2
845,587 + Atu0843 0.78 -3.5
845,668 + Atu0843 0.81 -2.6
845,671 - Atu0843 0.81 -0.4
845,689 + Atu0843 0.82 +0.8
845,689 + Atu0843 0.82 -4.4
845,738 + Atu0843 0.84 -2.4
845,763 + Atu0843 0.84 -1.2
845,794 - Atu0843 0.86 +0.4
845,927 - -3.7
846,006 - +0.4
846,074 - -1.4
846,095 + -2.8
846,095 + +0.2
846,356 - +0.1
846,396 + -0.4
846,406 - +0.3
846,411 - +0.5
846,465 - Atu0844 0.12 -1.7
846,581 + Atu0844 0.25 +0.2
846,581 + Atu0844 0.25 +0.0
846,589 - Atu0844 0.26 +1.7
846,633 - Atu0844 0.31 -1.7
846,655 + Atu0844 0.33 +0.1
846,656 - Atu0844 0.33 +0.3
846,661 - Atu0844 0.34 +0.6
846,663 - Atu0844 0.34 +1.4
846,699 - Atu0844 0.38 +1.1
846,727 - Atu0844 0.41 +0.6
846,799 + Atu0844 0.49 +0.6
846,805 + Atu0844 0.50 -0.9
846,852 + Atu0844 0.55 -0.4
846,856 + Atu0844 0.55 +0.9
846,941 - Atu0844 0.65 -0.1
846,968 - Atu0844 0.68 -0.2
847,007 + Atu0844 0.72 -1.6
847,027 - Atu0844 0.74 -1.4
847,073 - Atu0844 0.79 -0.1

Or see this region's nucleotide sequence