Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0771 and Atu0772 are separated by 261 nucleotides Atu0772 and Atu0773 are separated by 10 nucleotides Atu0773 and Atu0774 are separated by 58 nucleotides
Atu0771: Atu0771 - cytochrome c oxidase subunit III, at 767,408 to 768,283
Atu0771
Atu0772: Atu0772 - hypothetical protein, at 768,545 to 768,931
Atu0772
Atu0773: Atu0773 - surfeit 1, at 768,942 to 769,676
Atu0773
Atu0774: Atu0774 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 769,735 to 770,781
Atu0774
Position (kb) 768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.561 kb on + strand, within Atu0771 at 767.589 kb on - strand, within Atu0771 at 767.668 kb on - strand, within Atu0771 at 767.751 kb on - strand, within Atu0771 at 767.877 kb on - strand, within Atu0771 at 767.877 kb on - strand, within Atu0771 at 767.904 kb on + strand, within Atu0771 at 767.910 kb on + strand, within Atu0771 at 767.973 kb on - strand, within Atu0771 at 767.973 kb on - strand, within Atu0771 at 767.974 kb on - strand, within Atu0771 at 768.029 kb on + strand, within Atu0771 at 768.121 kb on - strand, within Atu0771 at 768.195 kb on + strand, within Atu0771 at 768.300 kb on - strand at 768.359 kb on + strand at 768.417 kb on + strand at 768.491 kb on + strand at 768.547 kb on - strand at 768.547 kb on - strand at 768.604 kb on - strand, within Atu0772 at 768.605 kb on - strand, within Atu0772 at 768.683 kb on - strand, within Atu0772 at 768.685 kb on + strand, within Atu0772 at 768.693 kb on - strand, within Atu0772 at 768.694 kb on - strand, within Atu0772 at 768.783 kb on + strand, within Atu0772 at 768.791 kb on + strand, within Atu0772 at 768.809 kb on + strand, within Atu0772 at 768.817 kb on - strand, within Atu0772 at 768.976 kb on + strand at 769.103 kb on + strand, within Atu0773 at 769.110 kb on + strand, within Atu0773 at 769.111 kb on - strand, within Atu0773 at 769.118 kb on - strand, within Atu0773 at 769.222 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.359 kb on + strand, within Atu0773 at 769.465 kb on + strand, within Atu0773 at 769.549 kb on + strand, within Atu0773 at 769.552 kb on - strand, within Atu0773 at 769.689 kb on + strand at 769.707 kb on + strand at 769.707 kb on + strand at 769.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 767,561 + Atu0771 0.17 -1.5 767,589 - Atu0771 0.21 -0.9 767,668 - Atu0771 0.30 -0.3 767,751 - Atu0771 0.39 +1.2 767,877 - Atu0771 0.54 -1.7 767,877 - Atu0771 0.54 +1.1 767,904 + Atu0771 0.57 -2.9 767,910 + Atu0771 0.57 -2.2 767,973 - Atu0771 0.64 -2.1 767,973 - Atu0771 0.64 -2.7 767,974 - Atu0771 0.65 -1.9 768,029 + Atu0771 0.71 -0.4 768,121 - Atu0771 0.81 -2.2 768,195 + Atu0771 0.90 -2.4 768,300 - -1.2 768,359 + -0.1 768,417 + +0.2 768,491 + -0.7 768,547 - -1.1 768,547 - +0.0 768,604 - Atu0772 0.15 -0.2 768,605 - Atu0772 0.16 -0.8 768,683 - Atu0772 0.36 +1.2 768,685 + Atu0772 0.36 +1.5 768,693 - Atu0772 0.38 -0.4 768,694 - Atu0772 0.39 -0.9 768,783 + Atu0772 0.61 +0.5 768,791 + Atu0772 0.64 +1.9 768,809 + Atu0772 0.68 +0.5 768,817 - Atu0772 0.70 +0.6 768,976 + +0.1 769,103 + Atu0773 0.22 -0.7 769,110 + Atu0773 0.23 +0.2 769,111 - Atu0773 0.23 -1.3 769,118 - Atu0773 0.24 +0.0 769,222 - Atu0773 0.38 +0.9 769,337 - Atu0773 0.54 +0.3 769,337 - Atu0773 0.54 +0.2 769,337 - Atu0773 0.54 -0.6 769,359 + Atu0773 0.57 +1.5 769,465 + Atu0773 0.71 -0.6 769,549 + Atu0773 0.83 +0.2 769,552 - Atu0773 0.83 -1.0 769,689 + -1.1 769,707 + -2.0 769,707 + -0.9 769,707 + -1.2
Or see this region's nucleotide sequence