Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0474 and Atu0475 overlap by 4 nucleotides Atu0475 and Atu0476 are separated by 268 nucleotides Atu0476 and Atu0477 are separated by 22 nucleotides Atu0477 and Atu0478 are separated by 211 nucleotides
Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382
Atu0474
Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083
Atu0475
Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077
Atu0476
Atu0477: Atu0477 - hypothetical protein, at 465,100 to 465,423
Atu0477
Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182
Atu0478
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 463.419 kb on + strand at 463.424 kb on + strand at 463.424 kb on + strand at 463.444 kb on + strand at 463.452 kb on - strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.539 kb on + strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.662 kb on + strand, within Atu0475 at 463.715 kb on + strand, within Atu0475 at 463.745 kb on - strand, within Atu0475 at 463.834 kb on - strand, within Atu0475 at 463.837 kb on - strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.867 kb on + strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.879 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.932 kb on + strand, within Atu0475 at 463.987 kb on + strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.127 kb on - strand at 464.220 kb on + strand at 464.228 kb on - strand at 464.228 kb on - strand at 464.347 kb on + strand at 464.414 kb on - strand at 464.414 kb on - strand at 464.477 kb on - strand, within Atu0476 at 464.489 kb on + strand, within Atu0476 at 464.495 kb on + strand, within Atu0476 at 464.539 kb on + strand, within Atu0476 at 464.623 kb on - strand, within Atu0476 at 464.658 kb on - strand, within Atu0476 at 464.702 kb on + strand, within Atu0476 at 464.795 kb on - strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.865 kb on - strand, within Atu0476 at 464.928 kb on - strand, within Atu0476 at 464.932 kb on - strand, within Atu0476 at 464.941 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.960 kb on - strand, within Atu0476 at 464.962 kb on + strand, within Atu0476 at 464.974 kb on - strand, within Atu0476 at 465.172 kb on + strand, within Atu0477 at 465.384 kb on - strand, within Atu0477 at 465.410 kb on - strand at 465.448 kb on + strand at 465.474 kb on - strand at 465.538 kb on + strand at 465.538 kb on + strand at 465.600 kb on + strand at 465.609 kb on + strand at 465.610 kb on - strand at 465.709 kb on - strand at 465.711 kb on - strand at 465.760 kb on + strand at 465.882 kb on + strand, within Atu0478 at 465.922 kb on - strand, within Atu0478 at 465.952 kb on - strand, within Atu0478 at 465.964 kb on - strand, within Atu0478 at 465.998 kb on + strand, within Atu0478 at 466.042 kb on + strand, within Atu0478 at 466.050 kb on - strand, within Atu0478
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 463,419 + +1.1 463,424 + +3.3 463,424 + +0.1 463,444 + -0.7 463,452 - Atu0475 0.10 -0.4 463,475 + Atu0475 0.14 +0.3 463,475 + Atu0475 0.14 -0.2 463,539 + Atu0475 0.23 +0.0 463,564 - Atu0475 0.26 -1.8 463,564 - Atu0475 0.26 -0.0 463,564 - Atu0475 0.26 +1.1 463,662 + Atu0475 0.40 +0.5 463,715 + Atu0475 0.48 -0.5 463,745 - Atu0475 0.52 +0.5 463,834 - Atu0475 0.65 +0.1 463,837 - Atu0475 0.65 -1.9 463,861 + Atu0475 0.68 -0.3 463,861 + Atu0475 0.68 -1.6 463,867 + Atu0475 0.69 -0.8 463,869 - Atu0475 0.70 +0.1 463,869 - Atu0475 0.70 -0.7 463,876 + Atu0475 0.70 -0.6 463,876 + Atu0475 0.70 -0.2 463,876 + Atu0475 0.70 -0.1 463,879 - Atu0475 0.71 -0.6 463,884 - Atu0475 0.72 +0.0 463,884 - Atu0475 0.72 -0.3 463,884 - Atu0475 0.72 -0.6 463,932 + Atu0475 0.78 -0.3 463,987 + Atu0475 0.86 -0.1 464,009 - Atu0475 0.89 +0.6 464,009 - Atu0475 0.89 -0.2 464,127 - -0.8 464,220 + -0.7 464,228 - +1.2 464,228 - -0.1 464,347 + +0.4 464,414 - +1.5 464,414 - -0.9 464,477 - Atu0476 0.17 +0.3 464,489 + Atu0476 0.19 -0.1 464,495 + Atu0476 0.20 +0.7 464,539 + Atu0476 0.26 -0.1 464,623 - Atu0476 0.37 +2.2 464,658 - Atu0476 0.42 +0.5 464,702 + Atu0476 0.48 +0.9 464,795 - Atu0476 0.61 +1.3 464,845 + Atu0476 0.68 +0.2 464,845 + Atu0476 0.68 +0.2 464,845 + Atu0476 0.68 -1.1 464,853 - Atu0476 0.69 +3.1 464,853 - Atu0476 0.69 -0.8 464,853 - Atu0476 0.69 +1.4 464,853 - Atu0476 0.69 -0.1 464,853 - Atu0476 0.69 +0.4 464,857 + Atu0476 0.70 +0.1 464,857 + Atu0476 0.70 +0.3 464,865 - Atu0476 0.71 -0.5 464,928 - Atu0476 0.79 -0.6 464,932 - Atu0476 0.80 -0.5 464,941 + Atu0476 0.81 +2.1 464,957 + Atu0476 0.83 -0.4 464,957 + Atu0476 0.83 +0.6 464,960 - Atu0476 0.84 -0.7 464,962 + Atu0476 0.84 -0.1 464,974 - Atu0476 0.86 +1.2 465,172 + Atu0477 0.22 +0.9 465,384 - Atu0477 0.88 -1.2 465,410 - -0.0 465,448 + -0.1 465,474 - -2.3 465,538 + -0.3 465,538 + -0.4 465,600 + +1.3 465,609 + -0.5 465,610 - -2.3 465,709 - +0.1 465,711 - -1.2 465,760 + +0.8 465,882 + Atu0478 0.16 -0.0 465,922 - Atu0478 0.19 -1.8 465,952 - Atu0478 0.20 +0.5 465,964 - Atu0478 0.21 -0.2 465,998 + Atu0478 0.23 +0.5 466,042 + Atu0478 0.26 +3.2 466,050 - Atu0478 0.27 -0.1
Or see this region's nucleotide sequence