Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0169 and Atu0170 overlap by 4 nucleotides Atu0170 and Atu0171 are separated by 283 nucleotides
Atu0169: Atu0169 - hypothetical protein, at 172,980 to 174,116
Atu0169
Atu0170: Atu0170 - hypothetical protein, at 174,113 to 174,802
Atu0170
Atu0171: Atu0171 - ABC transporter, membrane spanning protein (phosphonate), at 175,086 to 176,435
Atu0171
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 173.155 kb on + strand, within Atu0169 at 173.163 kb on - strand, within Atu0169 at 173.315 kb on - strand, within Atu0169 at 173.316 kb on + strand, within Atu0169 at 173.383 kb on - strand, within Atu0169 at 173.461 kb on - strand, within Atu0169 at 173.611 kb on + strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.656 kb on + strand, within Atu0169 at 173.830 kb on + strand, within Atu0169 at 173.840 kb on + strand, within Atu0169 at 173.877 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 174.029 kb on - strand at 174.045 kb on + strand at 174.053 kb on - strand at 174.091 kb on + strand at 174.099 kb on - strand at 174.109 kb on - strand at 174.310 kb on - strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.355 kb on - strand, within Atu0170 at 174.419 kb on + strand, within Atu0170 at 174.427 kb on - strand, within Atu0170 at 174.429 kb on + strand, within Atu0170 at 174.437 kb on - strand, within Atu0170 at 174.623 kb on + strand, within Atu0170 at 174.631 kb on - strand, within Atu0170 at 174.719 kb on - strand, within Atu0170 at 174.748 kb on - strand at 174.883 kb on - strand at 174.980 kb on - strand at 174.995 kb on + strand at 174.998 kb on - strand at 175.003 kb on - strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.028 kb on - strand at 175.172 kb on - strand at 175.177 kb on - strand at 175.331 kb on - strand, within Atu0171 at 175.384 kb on + strand, within Atu0171 at 175.385 kb on - strand, within Atu0171 at 175.418 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.437 kb on - strand, within Atu0171 at 175.461 kb on + strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.634 kb on - strand, within Atu0171 at 175.644 kb on - strand, within Atu0171 at 175.689 kb on - strand, within Atu0171 at 175.772 kb on + strand, within Atu0171 at 175.777 kb on + strand, within Atu0171
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 173,155 + Atu0169 0.15 +0.4 173,163 - Atu0169 0.16 +0.4 173,315 - Atu0169 0.29 -0.3 173,316 + Atu0169 0.30 +0.9 173,383 - Atu0169 0.35 +0.9 173,461 - Atu0169 0.42 +1.2 173,611 + Atu0169 0.55 +0.7 173,617 - Atu0169 0.56 -2.3 173,617 - Atu0169 0.56 -0.0 173,656 + Atu0169 0.59 +0.4 173,830 + Atu0169 0.75 -0.4 173,840 + Atu0169 0.76 +0.0 173,877 + Atu0169 0.79 +0.2 173,923 + Atu0169 0.83 -0.1 173,923 + Atu0169 0.83 -2.0 173,923 + Atu0169 0.83 +0.8 173,923 + Atu0169 0.83 -0.5 173,931 - Atu0169 0.84 +0.1 173,931 - Atu0169 0.84 -0.1 174,029 - -0.2 174,045 + -1.3 174,053 - +0.6 174,091 + +0.2 174,099 - +0.9 174,109 - +0.1 174,310 - Atu0170 0.29 -2.1 174,347 + Atu0170 0.34 +0.6 174,347 + Atu0170 0.34 -3.4 174,347 + Atu0170 0.34 -0.8 174,355 - Atu0170 0.35 +0.1 174,419 + Atu0170 0.44 -0.0 174,427 - Atu0170 0.46 +0.5 174,429 + Atu0170 0.46 +6.3 174,437 - Atu0170 0.47 -0.3 174,623 + Atu0170 0.74 +0.6 174,631 - Atu0170 0.75 +0.8 174,719 - Atu0170 0.88 -1.8 174,748 - +0.7 174,883 - -1.4 174,980 - -3.0 174,995 + +0.7 174,998 - +0.0 175,003 - +0.3 175,010 + +0.5 175,010 + -2.8 175,028 - -0.9 175,172 - +1.0 175,177 - -0.9 175,331 - Atu0171 0.18 +3.0 175,384 + Atu0171 0.22 -0.6 175,385 - Atu0171 0.22 +0.4 175,418 + Atu0171 0.25 -0.4 175,423 + Atu0171 0.25 -0.2 175,423 + Atu0171 0.25 +2.5 175,423 + Atu0171 0.25 -0.2 175,423 + Atu0171 0.25 -1.1 175,431 - Atu0171 0.26 -2.1 175,431 - Atu0171 0.26 -0.1 175,431 - Atu0171 0.26 +0.4 175,431 - Atu0171 0.26 -0.1 175,437 - Atu0171 0.26 +0.5 175,461 + Atu0171 0.28 -1.5 175,524 - Atu0171 0.32 -0.6 175,524 - Atu0171 0.32 -0.1 175,524 - Atu0171 0.32 -0.8 175,634 - Atu0171 0.41 -1.9 175,644 - Atu0171 0.41 -0.2 175,689 - Atu0171 0.45 +0.5 175,772 + Atu0171 0.51 -0.1 175,777 + Atu0171 0.51 +1.0
Or see this region's nucleotide sequence