Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6151 and Atu6152 are separated by 275 nucleotides Atu6152 and Atu6153 are separated by 83 nucleotides Atu6153 and Atu6154 are separated by 542 nucleotides
Atu6151: Atu6151 - P-450 monoxygenase, at 169,219 to 170,394
Atu6151
Atu6152: Atu6152 - transposase, at 170,670 to 171,593
Atu6152
Atu6153: Atu6153 - conserved hypothetical protein, at 171,677 to 171,946
Atu6153
Atu6154: Atu6154 - exported virulence protein, at 172,489 to 173,427
Atu6154
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 169.749 kb on - strand, within Atu6151 at 169.794 kb on - strand, within Atu6151 at 169.816 kb on + strand, within Atu6151 at 169.967 kb on + strand, within Atu6151 at 169.975 kb on - strand, within Atu6151 at 169.977 kb on + strand, within Atu6151 at 169.977 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.986 kb on + strand, within Atu6151 at 169.994 kb on - strand, within Atu6151 at 170.008 kb on + strand, within Atu6151 at 170.016 kb on - strand, within Atu6151 at 170.036 kb on + strand, within Atu6151 at 170.036 kb on + strand, within Atu6151 at 170.036 kb on + strand, within Atu6151 at 170.044 kb on - strand, within Atu6151 at 170.128 kb on + strand, within Atu6151 at 170.178 kb on + strand, within Atu6151 at 170.191 kb on + strand, within Atu6151 at 170.232 kb on - strand, within Atu6151 at 170.317 kb on - strand at 170.332 kb on - strand at 170.343 kb on - strand at 170.343 kb on - strand at 170.343 kb on - strand at 170.343 kb on - strand at 170.414 kb on + strand at 170.438 kb on + strand at 170.521 kb on - strand at 170.553 kb on - strand at 170.553 kb on - strand at 170.668 kb on - strand at 170.700 kb on - strand at 170.711 kb on + strand at 170.711 kb on + strand at 170.718 kb on + strand at 170.801 kb on - strand, within Atu6152 at 170.829 kb on + strand, within Atu6152 at 170.835 kb on - strand, within Atu6152 at 170.836 kb on - strand, within Atu6152 at 170.880 kb on - strand, within Atu6152 at 170.962 kb on - strand, within Atu6152 at 170.962 kb on - strand, within Atu6152 at 170.962 kb on - strand, within Atu6152 at 170.993 kb on + strand, within Atu6152 at 171.001 kb on - strand, within Atu6152 at 171.028 kb on - strand, within Atu6152 at 171.028 kb on - strand, within Atu6152 at 171.028 kb on - strand, within Atu6152 at 171.080 kb on + strand, within Atu6152 at 171.088 kb on - strand, within Atu6152 at 171.108 kb on - strand, within Atu6152 at 171.121 kb on + strand, within Atu6152 at 171.122 kb on - strand, within Atu6152 at 171.141 kb on - strand, within Atu6152 at 171.187 kb on + strand, within Atu6152 at 171.261 kb on - strand, within Atu6152 at 171.272 kb on + strand, within Atu6152 at 171.272 kb on - strand, within Atu6152 at 171.291 kb on - strand, within Atu6152 at 171.291 kb on - strand, within Atu6152 at 171.343 kb on - strand, within Atu6152 at 171.424 kb on + strand, within Atu6152 at 171.432 kb on - strand, within Atu6152 at 171.453 kb on - strand, within Atu6152 at 171.453 kb on - strand, within Atu6152 at 171.463 kb on - strand, within Atu6152 at 171.519 kb on + strand at 171.532 kb on - strand at 171.532 kb on - strand at 171.699 kb on + strand at 171.776 kb on - strand, within Atu6153 at 171.786 kb on - strand, within Atu6153 at 171.804 kb on - strand, within Atu6153 at 171.852 kb on - strand, within Atu6153 at 171.873 kb on + strand, within Atu6153 at 171.893 kb on - strand, within Atu6153 at 171.961 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.963 kb on + strand at 171.970 kb on + strand at 171.970 kb on + strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.971 kb on - strand at 171.978 kb on - strand at 171.980 kb on + strand at 171.993 kb on - strand at 172.025 kb on - strand at 172.025 kb on - strand at 172.025 kb on - strand at 172.025 kb on - strand at 172.025 kb on - strand at 172.102 kb on + strand at 172.166 kb on + strand at 172.213 kb on + strand at 172.221 kb on + strand at 172.229 kb on - strand at 172.293 kb on + strand at 172.444 kb on + strand at 172.447 kb on - strand at 172.480 kb on + strand at 172.487 kb on - strand at 172.489 kb on + strand at 172.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 169,749 - Atu6151 0.45 +0.0 169,794 - Atu6151 0.49 +0.6 169,816 + Atu6151 0.51 +3.1 169,967 + Atu6151 0.64 -0.4 169,975 - Atu6151 0.64 -0.7 169,977 + Atu6151 0.64 -1.1 169,977 + Atu6151 0.64 -0.3 169,986 + Atu6151 0.65 -0.5 169,986 + Atu6151 0.65 +1.7 169,986 + Atu6151 0.65 -0.0 169,986 + Atu6151 0.65 +0.5 169,986 + Atu6151 0.65 -0.6 169,986 + Atu6151 0.65 -2.1 169,986 + Atu6151 0.65 +0.0 169,994 - Atu6151 0.66 -0.6 170,008 + Atu6151 0.67 -0.3 170,016 - Atu6151 0.68 -0.1 170,036 + Atu6151 0.69 +0.7 170,036 + Atu6151 0.69 +0.2 170,036 + Atu6151 0.69 +1.5 170,044 - Atu6151 0.70 -0.9 170,128 + Atu6151 0.77 -0.4 170,178 + Atu6151 0.82 +2.7 170,191 + Atu6151 0.83 -0.5 170,232 - Atu6151 0.86 -1.4 170,317 - -0.8 170,332 - -0.7 170,343 - -1.0 170,343 - -0.0 170,343 - -2.1 170,343 - -0.2 170,414 + -0.9 170,438 + +0.4 170,521 - -0.3 170,553 - -1.1 170,553 - -1.2 170,668 - +0.1 170,700 - +0.1 170,711 + +0.9 170,711 + +0.7 170,718 + -2.0 170,801 - Atu6152 0.14 -0.1 170,829 + Atu6152 0.17 -0.3 170,835 - Atu6152 0.18 +0.2 170,836 - Atu6152 0.18 +0.1 170,880 - Atu6152 0.23 -0.5 170,962 - Atu6152 0.32 +1.4 170,962 - Atu6152 0.32 +1.0 170,962 - Atu6152 0.32 +0.9 170,993 + Atu6152 0.35 -2.8 171,001 - Atu6152 0.36 -2.2 171,028 - Atu6152 0.39 +1.5 171,028 - Atu6152 0.39 -0.2 171,028 - Atu6152 0.39 +0.5 171,080 + Atu6152 0.44 -0.3 171,088 - Atu6152 0.45 +0.9 171,108 - Atu6152 0.47 -0.0 171,121 + Atu6152 0.49 -0.5 171,122 - Atu6152 0.49 -3.3 171,141 - Atu6152 0.51 -1.7 171,187 + Atu6152 0.56 +0.3 171,261 - Atu6152 0.64 -0.0 171,272 + Atu6152 0.65 +1.4 171,272 - Atu6152 0.65 +0.9 171,291 - Atu6152 0.67 -1.7 171,291 - Atu6152 0.67 -0.9 171,343 - Atu6152 0.73 +1.2 171,424 + Atu6152 0.82 +0.5 171,432 - Atu6152 0.82 -0.1 171,453 - Atu6152 0.85 -1.1 171,453 - Atu6152 0.85 -1.4 171,463 - Atu6152 0.86 -0.3 171,519 + +0.5 171,532 - +0.9 171,532 - +0.9 171,699 + -0.4 171,776 - Atu6153 0.37 -1.4 171,786 - Atu6153 0.40 -0.7 171,804 - Atu6153 0.47 +0.4 171,852 - Atu6153 0.65 -1.5 171,873 + Atu6153 0.73 -1.9 171,893 - Atu6153 0.80 +0.2 171,961 + -0.2 171,963 + +0.7 171,963 + -1.2 171,963 + -0.0 171,963 + -1.3 171,963 + -1.6 171,963 + +0.6 171,963 + -3.0 171,963 + -1.1 171,963 + +0.6 171,963 + +3.7 171,970 + -2.1 171,970 + +0.9 171,971 - -0.7 171,971 - +0.3 171,971 - -0.1 171,971 - +0.4 171,971 - +0.8 171,971 - +1.0 171,971 - +2.1 171,978 - +0.4 171,980 + -0.1 171,993 - -1.1 172,025 - -0.6 172,025 - +0.1 172,025 - +0.6 172,025 - -1.5 172,025 - -0.9 172,102 + +0.1 172,166 + +3.5 172,213 + -0.8 172,221 + -0.6 172,229 - +0.5 172,293 + +0.8 172,444 + +0.7 172,447 - -0.3 172,480 + -1.1 172,487 - +0.3 172,489 + +0.9 172,523 - +0.1
Or see this region's nucleotide sequence