Strain Fitness in Agrobacterium fabrum C58 around Atu6027

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6025 and Atu6026 are separated by 1 nucleotidesAtu6026 and Atu6027 are separated by 73 nucleotidesAtu6027 and Atu6028 are separated by 64 nucleotides Atu6025: Atu6025 - ABC transporter, membrane spanning protein (nopaline), at 36,854 to 37,579 Atu6025 Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291 Atu6026 Atu6027: Atu6027 - ABC transporter, substrate binding protein (nopaline), at 38,365 to 39,216 Atu6027 Atu6028: Atu6028 - ABC transporter, nucleotide binding/ATPase protein (nopaline), at 39,281 to 40,054 Atu6028 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.373 kb on + strand, within Atu6025at 37.390 kb on + strand, within Atu6025at 37.404 kb on + strand, within Atu6025at 37.452 kb on + strand, within Atu6025at 37.488 kb on - strand, within Atu6025at 37.522 kb on - strandat 37.533 kb on + strandat 37.538 kb on + strandat 37.590 kb on + strandat 37.595 kb on - strandat 37.695 kb on - strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.801 kb on + strand, within Atu6026at 37.811 kb on + strand, within Atu6026at 37.885 kb on + strand, within Atu6026at 37.893 kb on - strand, within Atu6026at 37.895 kb on + strand, within Atu6026at 37.934 kb on + strand, within Atu6026at 37.994 kb on - strand, within Atu6026at 38.035 kb on + strand, within Atu6026at 38.074 kb on - strand, within Atu6026at 38.107 kb on + strand, within Atu6026at 38.115 kb on - strand, within Atu6026at 38.138 kb on - strand, within Atu6026at 38.164 kb on + strand, within Atu6026at 38.184 kb on - strand, within Atu6026at 38.289 kb on - strandat 38.293 kb on + strandat 38.299 kb on + strandat 38.301 kb on - strandat 38.370 kb on + strandat 38.370 kb on + strandat 38.370 kb on + strandat 38.410 kb on + strandat 38.415 kb on + strandat 38.418 kb on - strandat 38.418 kb on - strandat 38.423 kb on - strandat 38.462 kb on + strand, within Atu6027at 38.470 kb on - strand, within Atu6027at 38.498 kb on + strand, within Atu6027at 38.564 kb on + strand, within Atu6027at 38.604 kb on + strand, within Atu6027at 38.612 kb on - strand, within Atu6027at 38.612 kb on - strand, within Atu6027at 38.656 kb on + strand, within Atu6027at 38.671 kb on - strand, within Atu6027at 38.722 kb on - strand, within Atu6027at 38.733 kb on + strand, within Atu6027at 38.741 kb on - strand, within Atu6027at 38.782 kb on - strand, within Atu6027at 38.853 kb on - strand, within Atu6027at 38.878 kb on - strand, within Atu6027at 38.984 kb on + strand, within Atu6027at 39.016 kb on + strand, within Atu6027at 39.104 kb on - strand, within Atu6027at 39.137 kb on + strandat 39.148 kb on + strandat 39.265 kb on - strandat 39.286 kb on - strandat 39.296 kb on - strandat 39.304 kb on + strandat 39.380 kb on - strand, within Atu6028at 39.392 kb on + strand, within Atu6028at 39.392 kb on + strand, within Atu6028at 39.400 kb on - strand, within Atu6028at 39.448 kb on - strand, within Atu6028at 39.481 kb on - strand, within Atu6028at 39.542 kb on - strand, within Atu6028at 39.595 kb on + strand, within Atu6028at 39.595 kb on + strand, within Atu6028at 39.603 kb on - strand, within Atu6028at 39.612 kb on - strand, within Atu6028at 39.635 kb on - strand, within Atu6028at 39.665 kb on + strand, within Atu6028at 39.672 kb on + strand, within Atu6028at 39.734 kb on - strand, within Atu6028at 39.742 kb on + strand, within Atu6028at 39.742 kb on + strand, within Atu6028at 39.864 kb on + strand, within Atu6028at 39.892 kb on + strand, within Atu6028at 39.892 kb on + strand, within Atu6028at 39.902 kb on + strand, within Atu6028at 39.912 kb on - strand, within Atu6028at 39.914 kb on + strand, within Atu6028at 40.037 kb on + strandat 40.039 kb on + strandat 40.096 kb on + strandat 40.118 kb on - strandat 40.139 kb on - strandat 40.184 kb on - strandat 40.184 kb on - strandat 40.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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37,373 + Atu6025 0.71 -0.4
37,390 + Atu6025 0.74 -1.5
37,404 + Atu6025 0.76 +0.5
37,452 + Atu6025 0.82 +1.4
37,488 - Atu6025 0.87 +0.3
37,522 - +1.3
37,533 + +0.1
37,538 + -0.1
37,590 + +0.5
37,595 - -0.8
37,695 - Atu6026 0.16 +1.4
37,758 + Atu6026 0.25 +1.6
37,758 + Atu6026 0.25 -1.7
37,758 + Atu6026 0.25 -0.1
37,801 + Atu6026 0.31 +0.2
37,811 + Atu6026 0.32 -2.5
37,885 + Atu6026 0.43 -0.8
37,893 - Atu6026 0.44 +0.9
37,895 + Atu6026 0.44 +0.0
37,934 + Atu6026 0.50 +0.1
37,994 - Atu6026 0.58 +1.3
38,035 + Atu6026 0.64 -0.1
38,074 - Atu6026 0.69 -1.3
38,107 + Atu6026 0.74 -0.1
38,115 - Atu6026 0.75 +0.3
38,138 - Atu6026 0.78 -0.5
38,164 + Atu6026 0.82 -0.4
38,184 - Atu6026 0.85 -0.6
38,289 - -0.1
38,293 + -1.6
38,299 + -0.4
38,301 - -0.6
38,370 + -1.4
38,370 + +1.2
38,370 + -0.2
38,410 + -1.3
38,415 + +0.9
38,418 - -1.3
38,418 - +0.2
38,423 - -0.0
38,462 + Atu6027 0.11 +0.6
38,470 - Atu6027 0.12 -0.8
38,498 + Atu6027 0.16 +1.9
38,564 + Atu6027 0.23 +0.3
38,604 + Atu6027 0.28 -0.0
38,612 - Atu6027 0.29 -2.1
38,612 - Atu6027 0.29 +0.7
38,656 + Atu6027 0.34 -0.2
38,671 - Atu6027 0.36 +0.9
38,722 - Atu6027 0.42 +0.1
38,733 + Atu6027 0.43 +1.1
38,741 - Atu6027 0.44 +1.1
38,782 - Atu6027 0.49 -0.4
38,853 - Atu6027 0.57 -0.4
38,878 - Atu6027 0.60 -0.1
38,984 + Atu6027 0.73 +2.5
39,016 + Atu6027 0.76 +0.8
39,104 - Atu6027 0.87 +1.5
39,137 + -1.8
39,148 + +0.2
39,265 - +0.4
39,286 - -0.7
39,296 - +0.8
39,304 + -3.2
39,380 - Atu6028 0.13 -0.6
39,392 + Atu6028 0.14 -0.7
39,392 + Atu6028 0.14 +1.4
39,400 - Atu6028 0.15 +1.5
39,448 - Atu6028 0.22 -0.0
39,481 - Atu6028 0.26 -1.3
39,542 - Atu6028 0.34 -0.1
39,595 + Atu6028 0.41 +0.8
39,595 + Atu6028 0.41 -1.0
39,603 - Atu6028 0.42 +1.4
39,612 - Atu6028 0.43 -1.2
39,635 - Atu6028 0.46 -0.6
39,665 + Atu6028 0.50 +0.5
39,672 + Atu6028 0.51 -1.5
39,734 - Atu6028 0.59 +0.5
39,742 + Atu6028 0.60 -0.4
39,742 + Atu6028 0.60 -0.4
39,864 + Atu6028 0.75 +0.6
39,892 + Atu6028 0.79 +0.9
39,892 + Atu6028 0.79 -0.8
39,902 + Atu6028 0.80 +0.2
39,912 - Atu6028 0.82 -1.1
39,914 + Atu6028 0.82 +1.5
40,037 + -0.4
40,039 + -0.8
40,096 + -1.0
40,118 - -0.7
40,139 - +2.3
40,184 - -0.3
40,184 - +0.7
40,184 - -0.0

Or see this region's nucleotide sequence