Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5442 and Atu5443 are separated by 98 nucleotides Atu5443 and Atu5444 are separated by 110 nucleotides Atu5444 and Atu5445 are separated by 57 nucleotides
Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524
Atu5442
Atu5443: Atu5443 - TetR family transcriptional regulator, at 436,623 to 437,171
Atu5443
Atu5444: Atu5444 - short-chain dehydrogenase, at 437,282 to 438,070
Atu5444
Atu5445: Atu5445 - oxidoreductase, at 438,128 to 439,222
Atu5445
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 435.642 kb on - strand, within Atu5442 at 435.666 kb on - strand, within Atu5442 at 435.708 kb on + strand, within Atu5442 at 435.708 kb on + strand, within Atu5442 at 435.747 kb on + strand, within Atu5442 at 435.747 kb on + strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.768 kb on - strand, within Atu5442 at 435.768 kb on - strand, within Atu5442 at 435.787 kb on - strand, within Atu5442 at 435.791 kb on - strand, within Atu5442 at 435.861 kb on - strand, within Atu5442 at 435.950 kb on - strand, within Atu5442 at 435.991 kb on + strand, within Atu5442 at 435.991 kb on + strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 436.013 kb on + strand, within Atu5442 at 436.029 kb on - strand, within Atu5442 at 436.070 kb on + strand, within Atu5442 at 436.070 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.080 kb on - strand, within Atu5442 at 436.080 kb on - strand, within Atu5442 at 436.088 kb on - strand, within Atu5442 at 436.088 kb on - strand, within Atu5442 at 436.096 kb on + strand, within Atu5442 at 436.096 kb on + strand, within Atu5442 at 436.114 kb on - strand, within Atu5442 at 436.124 kb on - strand, within Atu5442 at 436.199 kb on - strand, within Atu5442 at 436.200 kb on + strand, within Atu5442 at 436.228 kb on - strand, within Atu5442 at 436.238 kb on - strand, within Atu5442 at 436.370 kb on + strand at 436.388 kb on + strand at 436.403 kb on + strand at 436.403 kb on + strand at 436.498 kb on + strand at 436.590 kb on - strand at 436.614 kb on - strand at 436.628 kb on - strand at 436.687 kb on - strand, within Atu5443 at 436.714 kb on + strand, within Atu5443 at 436.762 kb on + strand, within Atu5443 at 436.770 kb on - strand, within Atu5443 at 436.794 kb on - strand, within Atu5443 at 436.809 kb on + strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.840 kb on + strand, within Atu5443 at 436.924 kb on - strand, within Atu5443 at 436.955 kb on + strand, within Atu5443 at 437.014 kb on + strand, within Atu5443 at 437.074 kb on + strand, within Atu5443 at 437.091 kb on + strand, within Atu5443 at 437.300 kb on + strand at 437.300 kb on + strand at 437.364 kb on + strand, within Atu5444 at 437.384 kb on + strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.511 kb on + strand, within Atu5444 at 437.586 kb on + strand, within Atu5444 at 437.596 kb on + strand, within Atu5444 at 437.614 kb on + strand, within Atu5444 at 437.790 kb on + strand, within Atu5444 at 437.872 kb on + strand, within Atu5444 at 437.915 kb on + strand, within Atu5444 at 438.030 kb on + strand at 438.040 kb on + strand at 438.064 kb on + strand at 438.072 kb on - strand at 438.072 kb on - strand at 438.074 kb on + strand at 438.160 kb on - strand at 438.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 435,642 - Atu5442 0.55 -0.1 435,666 - Atu5442 0.56 +0.2 435,708 + Atu5442 0.58 -0.1 435,708 + Atu5442 0.58 -1.3 435,747 + Atu5442 0.60 +0.1 435,747 + Atu5442 0.60 -2.9 435,755 - Atu5442 0.60 +0.2 435,755 - Atu5442 0.60 +2.1 435,755 - Atu5442 0.60 -0.8 435,768 - Atu5442 0.61 -1.3 435,768 - Atu5442 0.61 +0.3 435,787 - Atu5442 0.62 -0.7 435,791 - Atu5442 0.62 +1.7 435,861 - Atu5442 0.66 -1.8 435,950 - Atu5442 0.70 +1.9 435,991 + Atu5442 0.72 -1.3 435,991 + Atu5442 0.72 +3.9 435,999 - Atu5442 0.73 -0.8 435,999 - Atu5442 0.73 +0.3 435,999 - Atu5442 0.73 +0.4 436,013 + Atu5442 0.74 -0.9 436,029 - Atu5442 0.74 +0.1 436,070 + Atu5442 0.77 -0.0 436,070 + Atu5442 0.77 +0.6 436,072 + Atu5442 0.77 -1.4 436,072 + Atu5442 0.77 -0.2 436,072 + Atu5442 0.77 -0.5 436,072 + Atu5442 0.77 +1.1 436,072 + Atu5442 0.77 -0.2 436,080 - Atu5442 0.77 +0.7 436,080 - Atu5442 0.77 +0.2 436,088 - Atu5442 0.77 -0.2 436,088 - Atu5442 0.77 -3.3 436,096 + Atu5442 0.78 -1.1 436,096 + Atu5442 0.78 +0.6 436,114 - Atu5442 0.79 -0.1 436,124 - Atu5442 0.79 -1.4 436,199 - Atu5442 0.83 +0.4 436,200 + Atu5442 0.83 +1.3 436,228 - Atu5442 0.85 -1.3 436,238 - Atu5442 0.85 +3.8 436,370 + +2.4 436,388 + +0.3 436,403 + +1.4 436,403 + +0.7 436,498 + -0.3 436,590 - -0.2 436,614 - +0.1 436,628 - -1.3 436,687 - Atu5443 0.12 -0.3 436,714 + Atu5443 0.17 -0.8 436,762 + Atu5443 0.25 -1.5 436,770 - Atu5443 0.27 -1.1 436,794 - Atu5443 0.31 -3.2 436,809 + Atu5443 0.34 -1.3 436,824 - Atu5443 0.37 -0.3 436,824 - Atu5443 0.37 -1.0 436,840 + Atu5443 0.40 -1.7 436,924 - Atu5443 0.55 -0.5 436,955 + Atu5443 0.60 -1.5 437,014 + Atu5443 0.71 -1.9 437,074 + Atu5443 0.82 -1.0 437,091 + Atu5443 0.85 -1.0 437,300 + +1.4 437,300 + -2.6 437,364 + Atu5444 0.10 -0.1 437,384 + Atu5444 0.13 -0.9 437,507 - Atu5444 0.29 -2.7 437,507 - Atu5444 0.29 -1.9 437,507 - Atu5444 0.29 -1.2 437,511 + Atu5444 0.29 +0.1 437,586 + Atu5444 0.39 +0.7 437,596 + Atu5444 0.40 +1.0 437,614 + Atu5444 0.42 -1.0 437,790 + Atu5444 0.64 -1.4 437,872 + Atu5444 0.75 -1.8 437,915 + Atu5444 0.80 -0.2 438,030 + +0.2 438,040 + -1.8 438,064 + +0.9 438,072 - -3.1 438,072 - +0.6 438,074 + +2.6 438,160 - -2.4 438,168 - -0.8
Or see this region's nucleotide sequence