Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5182 and Atu5183 are separated by 85 nucleotides Atu5183 and Atu5184 are separated by 191 nucleotides Atu5184 and Atu5185 are separated by 167 nucleotides Atu5185 and Atu5186 overlap by 20 nucleotides
Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968
Atu5182
Atu5183: Atu5183 - hypothetical protein, at 180,054 to 180,650
Atu5183
Atu5184: Atu5184 - LysR family transcriptional regulator, at 180,842 to 181,771
Atu5184
Atu5185: Atu5185 - short chain dehydrogenase, at 181,939 to 182,703
Atu5185
Atu5186: Atu5186 - hypothetical protein, at 182,684 to 182,869
Atu5186
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.889 kb on + strand at 179.897 kb on - strand at 179.921 kb on + strand at 180.042 kb on - strand at 180.050 kb on - strand at 180.094 kb on + strand at 180.231 kb on - strand, within Atu5183 at 180.247 kb on - strand, within Atu5183 at 180.301 kb on + strand, within Atu5183 at 180.355 kb on + strand, within Atu5183 at 180.358 kb on + strand, within Atu5183 at 180.471 kb on + strand, within Atu5183 at 180.479 kb on - strand, within Atu5183 at 180.485 kb on + strand, within Atu5183 at 180.496 kb on + strand, within Atu5183 at 180.536 kb on + strand, within Atu5183 at 180.561 kb on - strand, within Atu5183 at 180.627 kb on - strand at 180.644 kb on - strand at 180.646 kb on + strand at 180.652 kb on + strand at 180.659 kb on + strand at 180.667 kb on - strand at 180.858 kb on + strand at 180.859 kb on + strand at 180.917 kb on + strand at 180.925 kb on - strand at 181.028 kb on - strand, within Atu5184 at 181.044 kb on + strand, within Atu5184 at 181.044 kb on + strand, within Atu5184 at 181.044 kb on + strand, within Atu5184 at 181.052 kb on - strand, within Atu5184 at 181.129 kb on + strand, within Atu5184 at 181.164 kb on + strand, within Atu5184 at 181.182 kb on - strand, within Atu5184 at 181.201 kb on + strand, within Atu5184 at 181.209 kb on - strand, within Atu5184 at 181.320 kb on - strand, within Atu5184 at 181.320 kb on - strand, within Atu5184 at 181.482 kb on + strand, within Atu5184 at 181.487 kb on + strand, within Atu5184 at 181.549 kb on + strand, within Atu5184 at 181.557 kb on - strand, within Atu5184 at 181.572 kb on - strand, within Atu5184 at 181.629 kb on + strand, within Atu5184 at 181.635 kb on - strand, within Atu5184 at 181.635 kb on - strand, within Atu5184 at 181.657 kb on + strand, within Atu5184 at 181.657 kb on + strand, within Atu5184 at 181.657 kb on + strand, within Atu5184 at 181.708 kb on + strand at 181.708 kb on + strand at 181.769 kb on - strand at 181.769 kb on - strand at 181.778 kb on - strand at 181.804 kb on + strand at 181.929 kb on - strand at 181.929 kb on - strand at 181.929 kb on - strand at 181.964 kb on + strand at 181.988 kb on + strand at 182.059 kb on - strand, within Atu5185 at 182.059 kb on - strand, within Atu5185 at 182.091 kb on + strand, within Atu5185 at 182.099 kb on - strand, within Atu5185 at 182.139 kb on + strand, within Atu5185 at 182.147 kb on - strand, within Atu5185 at 182.205 kb on + strand, within Atu5185 at 182.338 kb on + strand, within Atu5185 at 182.346 kb on - strand, within Atu5185 at 182.348 kb on + strand, within Atu5185 at 182.407 kb on - strand, within Atu5185 at 182.498 kb on + strand, within Atu5185 at 182.500 kb on - strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.574 kb on - strand, within Atu5185 at 182.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 179,889 + +0.2 179,897 - -0.0 179,921 + +0.3 180,042 - -0.2 180,050 - -0.7 180,094 + +2.4 180,231 - Atu5183 0.30 +1.8 180,247 - Atu5183 0.32 +0.2 180,301 + Atu5183 0.41 +0.0 180,355 + Atu5183 0.50 -0.2 180,358 + Atu5183 0.51 -1.7 180,471 + Atu5183 0.70 -0.9 180,479 - Atu5183 0.71 +1.3 180,485 + Atu5183 0.72 +0.7 180,496 + Atu5183 0.74 -1.0 180,536 + Atu5183 0.81 +0.2 180,561 - Atu5183 0.85 -0.2 180,627 - +0.6 180,644 - +1.0 180,646 + -0.2 180,652 + -1.6 180,659 + -1.2 180,667 - +0.5 180,858 + -3.3 180,859 + -0.4 180,917 + -0.5 180,925 - -0.7 181,028 - Atu5184 0.20 -0.6 181,044 + Atu5184 0.22 -1.5 181,044 + Atu5184 0.22 +1.1 181,044 + Atu5184 0.22 -0.1 181,052 - Atu5184 0.23 -0.0 181,129 + Atu5184 0.31 +0.8 181,164 + Atu5184 0.35 +1.3 181,182 - Atu5184 0.37 +1.5 181,201 + Atu5184 0.39 +0.1 181,209 - Atu5184 0.39 -0.6 181,320 - Atu5184 0.51 -1.4 181,320 - Atu5184 0.51 -0.8 181,482 + Atu5184 0.69 +1.7 181,487 + Atu5184 0.69 -1.5 181,549 + Atu5184 0.76 +0.1 181,557 - Atu5184 0.77 -1.4 181,572 - Atu5184 0.78 -1.1 181,629 + Atu5184 0.85 -1.0 181,635 - Atu5184 0.85 -1.5 181,635 - Atu5184 0.85 +0.3 181,657 + Atu5184 0.88 +1.0 181,657 + Atu5184 0.88 -3.1 181,657 + Atu5184 0.88 -1.4 181,708 + +1.8 181,708 + -1.3 181,769 - -2.5 181,769 - +3.3 181,778 - -0.3 181,804 + +0.0 181,929 - -1.9 181,929 - +1.2 181,929 - -1.0 181,964 + -1.8 181,988 + +0.6 182,059 - Atu5185 0.16 +0.2 182,059 - Atu5185 0.16 +1.3 182,091 + Atu5185 0.20 +0.3 182,099 - Atu5185 0.21 -1.9 182,139 + Atu5185 0.26 +0.0 182,147 - Atu5185 0.27 +1.2 182,205 + Atu5185 0.35 +0.9 182,338 + Atu5185 0.52 +0.1 182,346 - Atu5185 0.53 -0.1 182,348 + Atu5185 0.53 -1.6 182,407 - Atu5185 0.61 +1.3 182,498 + Atu5185 0.73 -2.5 182,500 - Atu5185 0.73 -1.0 182,533 + Atu5185 0.78 -0.2 182,533 + Atu5185 0.78 -0.4 182,541 - Atu5185 0.79 +0.6 182,541 - Atu5185 0.79 +1.0 182,541 - Atu5185 0.79 +1.3 182,541 - Atu5185 0.79 +1.1 182,574 - Atu5185 0.83 +1.4 182,665 + +1.0
Or see this region's nucleotide sequence