Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4243 and Atu4244 are separated by 59 nucleotides Atu4244 and Atu4245 are separated by 1 nucleotides Atu4245 and Atu4246 overlap by 4 nucleotides
Atu4243: Atu4243 - polyamine ABC transporter substrate-binding protein, at 1,367,454 to 1,368,464
Atu4243
Atu4244: Atu4244 - polyamine ABC transporter permease, at 1,368,524 to 1,369,399
Atu4244
Atu4245: Atu4245 - polyamine ABC transporter permease, at 1,369,401 to 1,370,201
Atu4245
Atu4246: Atu4246 - polyamine ABC transporter ATPase, at 1,370,198 to 1,371,280
Atu4246
Position (kb) 1369
1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1368.409 kb on - strand at 1368.523 kb on - strand at 1368.524 kb on - strand at 1368.566 kb on - strand at 1368.642 kb on + strand, within Atu4244 at 1368.702 kb on + strand, within Atu4244 at 1368.710 kb on + strand, within Atu4244 at 1368.718 kb on - strand, within Atu4244 at 1368.718 kb on - strand, within Atu4244 at 1368.718 kb on - strand, within Atu4244 at 1368.718 kb on - strand, within Atu4244 at 1368.728 kb on - strand, within Atu4244 at 1368.769 kb on + strand, within Atu4244 at 1368.777 kb on - strand, within Atu4244 at 1368.884 kb on + strand, within Atu4244 at 1368.932 kb on - strand, within Atu4244 at 1369.026 kb on - strand, within Atu4244 at 1369.113 kb on - strand, within Atu4244 at 1369.239 kb on - strand, within Atu4244 at 1369.290 kb on - strand, within Atu4244 at 1369.290 kb on - strand, within Atu4244 at 1369.291 kb on + strand, within Atu4244 at 1369.355 kb on + strand at 1369.383 kb on + strand at 1369.391 kb on - strand at 1369.456 kb on - strand at 1369.456 kb on - strand at 1369.473 kb on - strand at 1369.595 kb on + strand, within Atu4245 at 1369.626 kb on + strand, within Atu4245 at 1369.638 kb on + strand, within Atu4245 at 1369.855 kb on - strand, within Atu4245 at 1369.885 kb on - strand, within Atu4245 at 1369.916 kb on + strand, within Atu4245 at 1369.919 kb on + strand, within Atu4245 at 1369.972 kb on + strand, within Atu4245 at 1370.014 kb on + strand, within Atu4245 at 1370.132 kb on - strand at 1370.134 kb on - strand at 1370.256 kb on - strand at 1370.293 kb on + strand at 1370.301 kb on - strand at 1370.301 kb on - strand at 1370.339 kb on + strand, within Atu4246 at 1370.347 kb on - strand, within Atu4246 at 1370.425 kb on + strand, within Atu4246 at 1370.638 kb on - strand, within Atu4246 at 1370.638 kb on - strand, within Atu4246 at 1370.638 kb on - strand, within Atu4246 at 1370.688 kb on - strand, within Atu4246 at 1370.695 kb on + strand, within Atu4246 at 1370.840 kb on + strand, within Atu4246 at 1370.864 kb on - strand, within Atu4246 at 1371.073 kb on + strand, within Atu4246 at 1371.128 kb on - strand, within Atu4246
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 1,368,409 - +2.7 1,368,523 - +0.6 1,368,524 - -1.1 1,368,566 - -0.4 1,368,642 + Atu4244 0.13 -0.0 1,368,702 + Atu4244 0.20 +1.4 1,368,710 + Atu4244 0.21 -1.2 1,368,718 - Atu4244 0.22 +1.1 1,368,718 - Atu4244 0.22 +2.7 1,368,718 - Atu4244 0.22 +0.9 1,368,718 - Atu4244 0.22 -0.4 1,368,728 - Atu4244 0.23 -1.2 1,368,769 + Atu4244 0.28 +0.0 1,368,777 - Atu4244 0.29 +0.2 1,368,884 + Atu4244 0.41 -0.1 1,368,932 - Atu4244 0.47 -0.5 1,369,026 - Atu4244 0.57 -0.4 1,369,113 - Atu4244 0.67 +0.6 1,369,239 - Atu4244 0.82 +1.1 1,369,290 - Atu4244 0.87 -1.1 1,369,290 - Atu4244 0.87 -1.3 1,369,291 + Atu4244 0.88 -1.1 1,369,355 + -2.1 1,369,383 + +0.6 1,369,391 - -0.9 1,369,456 - -0.1 1,369,456 - -0.4 1,369,473 - -1.6 1,369,595 + Atu4245 0.24 +0.3 1,369,626 + Atu4245 0.28 -1.0 1,369,638 + Atu4245 0.30 -1.7 1,369,855 - Atu4245 0.57 -0.3 1,369,885 - Atu4245 0.60 +3.1 1,369,916 + Atu4245 0.64 +0.9 1,369,919 + Atu4245 0.65 +2.6 1,369,972 + Atu4245 0.71 +0.5 1,370,014 + Atu4245 0.77 -0.5 1,370,132 - -1.7 1,370,134 - +0.4 1,370,256 - -0.4 1,370,293 + +0.5 1,370,301 - +0.1 1,370,301 - +0.3 1,370,339 + Atu4246 0.13 +0.0 1,370,347 - Atu4246 0.14 +0.4 1,370,425 + Atu4246 0.21 -3.0 1,370,638 - Atu4246 0.41 -2.8 1,370,638 - Atu4246 0.41 -0.0 1,370,638 - Atu4246 0.41 +0.7 1,370,688 - Atu4246 0.45 -0.5 1,370,695 + Atu4246 0.46 -0.1 1,370,840 + Atu4246 0.59 -1.4 1,370,864 - Atu4246 0.61 +0.9 1,371,073 + Atu4246 0.81 -0.0 1,371,128 - Atu4246 0.86 +1.7
Or see this region's nucleotide sequence