Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3888 and Atu3889 are separated by 98 nucleotides Atu3889 and Atu3890 are separated by 6 nucleotides
Atu3888: Atu3888 - hypothetical protein, at 982,526 to 983,545
Atu3888
Atu3889: Atu3889 - LysR family transcriptional regulator, at 983,644 to 984,504
Atu3889
Atu3890: Atu3890 - glycerol kinase, at 984,511 to 986,010
Atu3890
Position (kb) 983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.649 kb on + strand, within Atu3888 at 982.775 kb on - strand, within Atu3888 at 982.833 kb on + strand, within Atu3888 at 982.895 kb on - strand, within Atu3888 at 982.923 kb on + strand, within Atu3888 at 982.959 kb on + strand, within Atu3888 at 983.021 kb on + strand, within Atu3888 at 983.022 kb on + strand, within Atu3888 at 983.070 kb on - strand, within Atu3888 at 983.123 kb on - strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.215 kb on - strand, within Atu3888 at 983.317 kb on + strand, within Atu3888 at 983.325 kb on - strand, within Atu3888 at 983.357 kb on + strand, within Atu3888 at 983.540 kb on + strand at 983.728 kb on + strand at 983.728 kb on + strand at 983.760 kb on + strand, within Atu3889 at 983.806 kb on - strand, within Atu3889 at 983.835 kb on - strand, within Atu3889 at 983.836 kb on + strand, within Atu3889 at 983.916 kb on + strand, within Atu3889 at 983.921 kb on + strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 984.002 kb on + strand, within Atu3889 at 984.010 kb on - strand, within Atu3889 at 984.016 kb on + strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.046 kb on - strand, within Atu3889 at 984.110 kb on - strand, within Atu3889 at 984.146 kb on + strand, within Atu3889 at 984.191 kb on + strand, within Atu3889 at 984.237 kb on + strand, within Atu3889 at 984.247 kb on + strand, within Atu3889 at 984.428 kb on - strand at 984.439 kb on + strand at 984.624 kb on - strand at 984.643 kb on - strand at 984.683 kb on + strand, within Atu3890 at 984.690 kb on + strand, within Atu3890 at 984.762 kb on + strand, within Atu3890 at 984.798 kb on - strand, within Atu3890 at 984.803 kb on - strand, within Atu3890 at 984.821 kb on - strand, within Atu3890 at 984.994 kb on - strand, within Atu3890 at 985.030 kb on + strand, within Atu3890 at 985.030 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.229 kb on + strand, within Atu3890 at 985.357 kb on + strand, within Atu3890 at 985.360 kb on - strand, within Atu3890 at 985.365 kb on - strand, within Atu3890 at 985.436 kb on - strand, within Atu3890 at 985.497 kb on + strand, within Atu3890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 982,649 + Atu3888 0.12 +0.4 982,775 - Atu3888 0.24 +1.7 982,833 + Atu3888 0.30 +0.9 982,895 - Atu3888 0.36 -0.5 982,923 + Atu3888 0.39 +1.5 982,959 + Atu3888 0.42 +2.4 983,021 + Atu3888 0.49 +0.4 983,022 + Atu3888 0.49 +1.6 983,070 - Atu3888 0.53 +0.0 983,123 - Atu3888 0.59 +1.0 983,192 + Atu3888 0.65 +0.1 983,192 + Atu3888 0.65 +0.2 983,192 + Atu3888 0.65 +0.0 983,212 + Atu3888 0.67 +2.6 983,212 + Atu3888 0.67 -1.1 983,215 - Atu3888 0.68 -0.0 983,317 + Atu3888 0.78 -0.7 983,325 - Atu3888 0.78 +0.8 983,357 + Atu3888 0.81 +0.5 983,540 + +0.2 983,728 + +0.9 983,728 + +0.6 983,760 + Atu3889 0.13 +1.2 983,806 - Atu3889 0.19 -0.1 983,835 - Atu3889 0.22 -0.7 983,836 + Atu3889 0.22 +0.0 983,916 + Atu3889 0.32 +0.3 983,921 + Atu3889 0.32 -0.5 983,924 - Atu3889 0.33 -2.2 983,924 - Atu3889 0.33 -0.6 983,929 - Atu3889 0.33 +2.0 983,929 - Atu3889 0.33 +0.4 984,002 + Atu3889 0.42 -0.4 984,010 - Atu3889 0.43 -1.3 984,016 + Atu3889 0.43 -2.3 984,024 - Atu3889 0.44 +0.8 984,024 - Atu3889 0.44 +0.2 984,046 - Atu3889 0.47 +0.9 984,110 - Atu3889 0.54 +0.4 984,146 + Atu3889 0.58 -1.2 984,191 + Atu3889 0.64 +0.5 984,237 + Atu3889 0.69 -0.9 984,247 + Atu3889 0.70 +0.6 984,428 - -0.0 984,439 + +1.0 984,624 - -0.8 984,643 - -3.6 984,683 + Atu3890 0.11 -3.4 984,690 + Atu3890 0.12 -0.1 984,762 + Atu3890 0.17 -2.8 984,798 - Atu3890 0.19 -2.4 984,803 - Atu3890 0.19 -0.1 984,821 - Atu3890 0.21 -2.3 984,994 - Atu3890 0.32 -1.7 985,030 + Atu3890 0.35 -2.1 985,030 + Atu3890 0.35 +2.0 985,203 + Atu3890 0.46 -0.0 985,203 + Atu3890 0.46 -0.8 985,203 + Atu3890 0.46 +0.7 985,229 + Atu3890 0.48 -1.4 985,357 + Atu3890 0.56 -1.4 985,360 - Atu3890 0.57 -0.3 985,365 - Atu3890 0.57 -1.1 985,436 - Atu3890 0.62 -0.5 985,497 + Atu3890 0.66 -0.4
Or see this region's nucleotide sequence