Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3832 and Atu3833 are separated by 163 nucleotides Atu3833 and Atu3834 are separated by 12 nucleotides Atu3834 and Atu3835 overlap by 14 nucleotides
Atu3832: Atu3832 - hypothetical protein, at 928,343 to 929,884
Atu3832
Atu3833: Atu3833 - hypothetical protein, at 930,048 to 930,587
Atu3833
Atu3834: Atu3834 - hypothetical protein, at 930,600 to 931,295
Atu3834
Atu3835: Atu3835 - hypothetical protein, at 931,282 to 932,067
Atu3835
Position (kb) 930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 929.662 kb on - strand, within Atu3832 at 929.673 kb on - strand, within Atu3832 at 929.760 kb on + strand at 929.793 kb on - strand at 929.888 kb on + strand at 929.960 kb on - strand at 930.046 kb on + strand at 930.128 kb on + strand, within Atu3833 at 930.157 kb on + strand, within Atu3833 at 930.256 kb on - strand, within Atu3833 at 930.256 kb on - strand, within Atu3833 at 930.280 kb on - strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.340 kb on + strand, within Atu3833 at 930.456 kb on - strand, within Atu3833 at 930.456 kb on - strand, within Atu3833 at 930.529 kb on - strand, within Atu3833 at 930.537 kb on + strand at 930.540 kb on - strand at 930.666 kb on - strand at 930.846 kb on - strand, within Atu3834 at 931.062 kb on + strand, within Atu3834 at 931.062 kb on + strand, within Atu3834 at 931.070 kb on - strand, within Atu3834 at 931.070 kb on - strand, within Atu3834 at 931.100 kb on + strand, within Atu3834 at 931.108 kb on - strand, within Atu3834 at 931.263 kb on - strand at 931.302 kb on + strand at 931.310 kb on - strand at 931.310 kb on - strand at 931.310 kb on - strand at 931.377 kb on - strand, within Atu3835 at 931.437 kb on - strand, within Atu3835 at 931.648 kb on - strand, within Atu3835 at 931.837 kb on + strand, within Atu3835 at 931.950 kb on + strand, within Atu3835 at 932.093 kb on + strand at 932.094 kb on - strand at 932.171 kb on - strand at 932.209 kb on + strand at 932.278 kb on + strand at 932.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 929,662 - Atu3832 0.86 -0.4 929,673 - Atu3832 0.86 -1.0 929,760 + -1.1 929,793 - -1.1 929,888 + +1.3 929,960 - -0.2 930,046 + +1.0 930,128 + Atu3833 0.15 +0.4 930,157 + Atu3833 0.20 -0.6 930,256 - Atu3833 0.39 +0.8 930,256 - Atu3833 0.39 +0.0 930,280 - Atu3833 0.43 -2.4 930,340 + Atu3833 0.54 -0.8 930,340 + Atu3833 0.54 -0.0 930,340 + Atu3833 0.54 +0.9 930,456 - Atu3833 0.76 +0.3 930,456 - Atu3833 0.76 -2.0 930,529 - Atu3833 0.89 +1.2 930,537 + +0.5 930,540 - +0.6 930,666 - +1.1 930,846 - Atu3834 0.35 -0.3 931,062 + Atu3834 0.66 -0.1 931,062 + Atu3834 0.66 +0.6 931,070 - Atu3834 0.68 -1.1 931,070 - Atu3834 0.68 +0.4 931,100 + Atu3834 0.72 -0.8 931,108 - Atu3834 0.73 +0.8 931,263 - +0.0 931,302 + -0.3 931,310 - -1.6 931,310 - +2.4 931,310 - +1.1 931,377 - Atu3835 0.12 -0.3 931,437 - Atu3835 0.20 -0.1 931,648 - Atu3835 0.47 +2.4 931,837 + Atu3835 0.71 +1.1 931,950 + Atu3835 0.85 -0.9 932,093 + -1.4 932,094 - -1.0 932,171 - +3.1 932,209 + -0.7 932,278 + +0.3 932,285 - +2.6
Or see this region's nucleotide sequence