Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3574 and Atu3575 are separated by 18 nucleotides Atu3575 and Atu3576 are separated by 80 nucleotides
Atu3574: Atu3574 - xylose ABC transporter ATPase, at 627,634 to 628,416
Atu3574
Atu3575: Atu3575 - xylose ABC transporter permease, at 628,435 to 629,748
Atu3575
Atu3576: Atu3576 - xylose ABC transporter substrate-binding protein, at 629,829 to 630,869
Atu3576
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 627.471 kb on + strand at 627.610 kb on + strand at 627.628 kb on - strand at 627.720 kb on + strand, within Atu3574 at 627.857 kb on + strand, within Atu3574 at 627.923 kb on - strand, within Atu3574 at 627.923 kb on - strand, within Atu3574 at 627.936 kb on - strand, within Atu3574 at 627.942 kb on + strand, within Atu3574 at 627.964 kb on - strand, within Atu3574 at 627.969 kb on - strand, within Atu3574 at 628.032 kb on - strand, within Atu3574 at 628.039 kb on + strand, within Atu3574 at 628.070 kb on - strand, within Atu3574 at 628.145 kb on - strand, within Atu3574 at 628.259 kb on + strand, within Atu3574 at 628.259 kb on + strand, within Atu3574 at 628.260 kb on - strand, within Atu3574 at 628.267 kb on - strand, within Atu3574 at 628.311 kb on - strand, within Atu3574 at 628.404 kb on - strand at 628.405 kb on - strand at 628.413 kb on + strand at 628.480 kb on + strand at 628.485 kb on + strand at 628.493 kb on - strand at 628.528 kb on + strand at 628.587 kb on + strand, within Atu3575 at 628.658 kb on + strand, within Atu3575 at 628.658 kb on + strand, within Atu3575 at 628.682 kb on + strand, within Atu3575 at 628.715 kb on + strand, within Atu3575 at 628.852 kb on + strand, within Atu3575 at 628.890 kb on - strand, within Atu3575 at 628.903 kb on - strand, within Atu3575 at 628.933 kb on + strand, within Atu3575 at 628.996 kb on - strand, within Atu3575 at 629.099 kb on - strand, within Atu3575 at 629.160 kb on - strand, within Atu3575 at 629.209 kb on + strand, within Atu3575 at 629.402 kb on - strand, within Atu3575 at 629.542 kb on + strand, within Atu3575 at 629.672 kb on - strand at 629.744 kb on + strand at 629.833 kb on + strand at 629.838 kb on - strand at 629.846 kb on - strand at 629.990 kb on - strand, within Atu3576 at 630.056 kb on - strand, within Atu3576 at 630.088 kb on + strand, within Atu3576 at 630.174 kb on - strand, within Atu3576 at 630.174 kb on - strand, within Atu3576 at 630.240 kb on - strand, within Atu3576 at 630.276 kb on + strand, within Atu3576 at 630.306 kb on + strand, within Atu3576 at 630.306 kb on + strand, within Atu3576 at 630.314 kb on - strand, within Atu3576 at 630.325 kb on + strand, within Atu3576 at 630.325 kb on + strand, within Atu3576 at 630.333 kb on - strand, within Atu3576 at 630.412 kb on + strand, within Atu3576 at 630.486 kb on - strand, within Atu3576 at 630.496 kb on + strand, within Atu3576 at 630.509 kb on + strand, within Atu3576 at 630.597 kb on + strand, within Atu3576 at 630.600 kb on - strand, within Atu3576 at 630.675 kb on + strand, within Atu3576 at 630.732 kb on - strand, within Atu3576
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 627,471 + +1.2 627,610 + +0.1 627,628 - -1.6 627,720 + Atu3574 0.11 -0.1 627,857 + Atu3574 0.28 -0.5 627,923 - Atu3574 0.37 -0.7 627,923 - Atu3574 0.37 -1.3 627,936 - Atu3574 0.39 +1.7 627,942 + Atu3574 0.39 +0.5 627,964 - Atu3574 0.42 +0.2 627,969 - Atu3574 0.43 -0.8 628,032 - Atu3574 0.51 -0.4 628,039 + Atu3574 0.52 +0.8 628,070 - Atu3574 0.56 +1.0 628,145 - Atu3574 0.65 +0.8 628,259 + Atu3574 0.80 -0.3 628,259 + Atu3574 0.80 +0.1 628,260 - Atu3574 0.80 -0.5 628,267 - Atu3574 0.81 +3.6 628,311 - Atu3574 0.86 +0.6 628,404 - +0.0 628,405 - +0.1 628,413 + -0.7 628,480 + +0.3 628,485 + -2.6 628,493 - -0.7 628,528 + -1.2 628,587 + Atu3575 0.12 +0.6 628,658 + Atu3575 0.17 -1.8 628,658 + Atu3575 0.17 -0.9 628,682 + Atu3575 0.19 -2.6 628,715 + Atu3575 0.21 +3.4 628,852 + Atu3575 0.32 -0.4 628,890 - Atu3575 0.35 +1.4 628,903 - Atu3575 0.36 -0.2 628,933 + Atu3575 0.38 +1.5 628,996 - Atu3575 0.43 -1.9 629,099 - Atu3575 0.51 +6.1 629,160 - Atu3575 0.55 +2.0 629,209 + Atu3575 0.59 -1.1 629,402 - Atu3575 0.74 +1.8 629,542 + Atu3575 0.84 -1.5 629,672 - +1.2 629,744 + +1.3 629,833 + -0.7 629,838 - -1.8 629,846 - -2.4 629,990 - Atu3576 0.15 +0.2 630,056 - Atu3576 0.22 +0.6 630,088 + Atu3576 0.25 +0.3 630,174 - Atu3576 0.33 +1.1 630,174 - Atu3576 0.33 -0.1 630,240 - Atu3576 0.39 +0.9 630,276 + Atu3576 0.43 -0.5 630,306 + Atu3576 0.46 +0.1 630,306 + Atu3576 0.46 +0.4 630,314 - Atu3576 0.47 +0.2 630,325 + Atu3576 0.48 +2.4 630,325 + Atu3576 0.48 +0.6 630,333 - Atu3576 0.48 -2.1 630,412 + Atu3576 0.56 -0.7 630,486 - Atu3576 0.63 -0.0 630,496 + Atu3576 0.64 -0.6 630,509 + Atu3576 0.65 -0.6 630,597 + Atu3576 0.74 -1.2 630,600 - Atu3576 0.74 +0.3 630,675 + Atu3576 0.81 -0.7 630,732 - Atu3576 0.87 +1.4
Or see this region's nucleotide sequence