Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3465 and Atu3466 overlap by 7 nucleotides Atu3466 and Atu3467 are separated by 29 nucleotides Atu3467 and Atu3468 overlap by 4 nucleotides Atu3468 and Atu3469 are separated by 74 nucleotides
Atu3465: Atu3465 - metallo-beta-lactamase superfamily protein, at 513,471 to 514,766
Atu3465
Atu3466: Atu3466 - ArsR family transcriptional regulator, at 514,760 to 515,113
Atu3466
Atu3467: Atu3467 - hypothetical protein, at 515,143 to 515,517
Atu3467
Atu3468: Atu3468 - hypothetical protein, at 515,514 to 515,951
Atu3468
Atu3469: Atu3469 - phosphoglyceromutase, at 516,026 to 517,543
Atu3469
Position (kb) 515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.270 kb on - strand, within Atu3465 at 514.280 kb on + strand, within Atu3465 at 514.368 kb on + strand, within Atu3465 at 514.620 kb on + strand, within Atu3465 at 514.756 kb on + strand at 514.864 kb on + strand, within Atu3466 at 514.944 kb on + strand, within Atu3466 at 515.047 kb on + strand, within Atu3466 at 515.116 kb on + strand at 515.118 kb on + strand at 515.223 kb on + strand, within Atu3467 at 515.365 kb on + strand, within Atu3467 at 515.536 kb on + strand at 515.544 kb on - strand at 515.788 kb on + strand, within Atu3468 at 515.935 kb on + strand at 515.960 kb on - strand at 515.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 514,270 - Atu3465 0.62 -0.5 514,280 + Atu3465 0.62 +0.6 514,368 + Atu3465 0.69 +1.4 514,620 + Atu3465 0.89 -0.8 514,756 + +2.0 514,864 + Atu3466 0.29 -2.9 514,944 + Atu3466 0.52 -0.1 515,047 + Atu3466 0.81 +0.0 515,116 + -2.6 515,118 + -1.5 515,223 + Atu3467 0.21 +0.4 515,365 + Atu3467 0.59 +1.8 515,536 + +1.1 515,544 - +0.6 515,788 + Atu3468 0.63 +1.8 515,935 + +0.3 515,960 - +0.6 515,962 + +0.1
Or see this region's nucleotide sequence