Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3165 and Atu3166 are separated by 379 nucleotides Atu3166 and Atu3167 overlap by 4 nucleotides
Atu3165: Atu3165 - sorbitol/mannitol ABC transporter substrate-binding protein, at 174,204 to 175,457
Atu3165
Atu3166: Atu3166 - fructokinase, at 175,837 to 176,826
Atu3166
Atu3167: Atu3167 - tagatose 6-phosphate kinase, at 176,823 to 178,100
Atu3167
Position (kb) 175
176
177 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 174.868 kb on + strand, within Atu3165 at 174.883 kb on + strand, within Atu3165 at 174.945 kb on + strand, within Atu3165 at 174.974 kb on + strand, within Atu3165 at 175.077 kb on + strand, within Atu3165 at 175.085 kb on - strand, within Atu3165 at 175.091 kb on + strand, within Atu3165 at 175.122 kb on - strand, within Atu3165 at 175.122 kb on - strand, within Atu3165 at 175.127 kb on - strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.230 kb on - strand, within Atu3165 at 175.273 kb on + strand, within Atu3165 at 175.281 kb on - strand, within Atu3165 at 175.434 kb on + strand at 175.459 kb on - strand at 175.459 kb on - strand at 175.469 kb on + strand at 175.477 kb on - strand at 175.477 kb on - strand at 175.506 kb on + strand at 175.828 kb on - strand at 175.828 kb on - strand at 175.830 kb on - strand at 175.833 kb on + strand at 175.855 kb on - strand at 175.908 kb on + strand at 176.072 kb on - strand, within Atu3166 at 176.107 kb on + strand, within Atu3166 at 176.271 kb on - strand, within Atu3166 at 176.356 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.399 kb on - strand, within Atu3166 at 176.420 kb on - strand, within Atu3166 at 176.566 kb on + strand, within Atu3166 at 176.581 kb on + strand, within Atu3166 at 176.614 kb on - strand, within Atu3166 at 176.665 kb on - strand, within Atu3166 at 176.707 kb on + strand, within Atu3166 at 176.750 kb on + strand at 176.883 kb on + strand at 176.888 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.906 kb on - strand at 176.913 kb on - strand at 176.971 kb on + strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 177.015 kb on - strand, within Atu3167 at 177.043 kb on - strand, within Atu3167 at 177.063 kb on - strand, within Atu3167 at 177.083 kb on - strand, within Atu3167 at 177.112 kb on - strand, within Atu3167 at 177.161 kb on + strand, within Atu3167 at 177.176 kb on - strand, within Atu3167 at 177.178 kb on + strand, within Atu3167 at 177.283 kb on - strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.378 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.421 kb on + strand, within Atu3167 at 177.460 kb on + strand, within Atu3167 at 177.468 kb on - strand, within Atu3167 at 177.477 kb on - strand, within Atu3167 at 177.628 kb on + strand, within Atu3167 at 177.794 kb on - strand, within Atu3167
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 174,868 + Atu3165 0.53 -2.3 174,883 + Atu3165 0.54 -1.0 174,945 + Atu3165 0.59 +1.8 174,974 + Atu3165 0.61 +2.5 175,077 + Atu3165 0.70 +1.7 175,085 - Atu3165 0.70 -1.0 175,091 + Atu3165 0.71 -0.9 175,122 - Atu3165 0.73 +0.9 175,122 - Atu3165 0.73 +0.8 175,127 - Atu3165 0.74 -0.4 175,129 + Atu3165 0.74 -1.0 175,129 + Atu3165 0.74 +0.7 175,129 + Atu3165 0.74 -0.8 175,129 + Atu3165 0.74 -0.9 175,129 + Atu3165 0.74 -0.5 175,137 - Atu3165 0.74 +0.2 175,137 - Atu3165 0.74 -1.0 175,137 - Atu3165 0.74 +1.0 175,137 - Atu3165 0.74 +0.7 175,230 - Atu3165 0.82 +1.3 175,273 + Atu3165 0.85 +1.5 175,281 - Atu3165 0.86 -1.2 175,434 + -0.3 175,459 - -0.1 175,459 - +1.0 175,469 + +0.4 175,477 - +0.1 175,477 - +0.9 175,506 + -1.9 175,828 - -0.6 175,828 - -0.0 175,830 - -0.2 175,833 + -0.7 175,855 - -1.4 175,908 + +0.1 176,072 - Atu3166 0.24 +0.7 176,107 + Atu3166 0.27 -0.7 176,271 - Atu3166 0.44 -2.2 176,356 - Atu3166 0.52 -3.9 176,365 - Atu3166 0.53 +0.5 176,365 - Atu3166 0.53 +0.2 176,380 + Atu3166 0.55 +0.0 176,380 + Atu3166 0.55 +0.1 176,399 - Atu3166 0.57 +0.8 176,420 - Atu3166 0.59 +0.3 176,566 + Atu3166 0.74 -0.2 176,581 + Atu3166 0.75 +1.0 176,614 - Atu3166 0.78 +0.4 176,665 - Atu3166 0.84 -0.8 176,707 + Atu3166 0.88 -1.4 176,750 + -0.6 176,883 + +0.0 176,888 + +0.4 176,893 + +0.6 176,893 + +0.4 176,893 + +0.8 176,905 + -0.8 176,905 + -0.4 176,905 + +0.3 176,906 - +0.5 176,913 - -1.9 176,971 + Atu3167 0.12 -1.8 176,998 - Atu3167 0.14 +0.3 176,998 - Atu3167 0.14 +0.5 177,015 - Atu3167 0.15 +0.8 177,043 - Atu3167 0.17 +3.5 177,063 - Atu3167 0.19 +0.7 177,083 - Atu3167 0.20 -1.8 177,112 - Atu3167 0.23 -0.0 177,161 + Atu3167 0.26 +1.5 177,176 - Atu3167 0.28 -0.6 177,178 + Atu3167 0.28 -1.9 177,283 - Atu3167 0.36 -0.3 177,377 + Atu3167 0.43 -0.2 177,377 + Atu3167 0.43 +2.9 177,378 - Atu3167 0.43 -1.4 177,385 - Atu3167 0.44 -3.5 177,385 - Atu3167 0.44 +0.1 177,421 + Atu3167 0.47 -0.8 177,460 + Atu3167 0.50 +1.0 177,468 - Atu3167 0.50 +0.7 177,477 - Atu3167 0.51 +1.0 177,628 + Atu3167 0.63 +0.4 177,794 - Atu3167 0.76 +1.5
Or see this region's nucleotide sequence