Strain Fitness in Agrobacterium fabrum C58 around Atu1561

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1559 and Atu1560 are separated by 123 nucleotidesAtu1560 and Atu1561 are separated by 23 nucleotidesAtu1561 and Atu1562 overlap by 1 nucleotides Atu1559: Atu1559 - hypothetical protein, at 1,546,526 to 1,546,984 Atu1559 Atu1560: Atu1560 - phytoene synthase, at 1,547,108 to 1,547,953 Atu1560 Atu1561: Atu1561 - hypothetical protein, at 1,547,977 to 1,548,369 Atu1561 Atu1562: Atu1562 - protein-export membrane protein SECD, at 1,548,369 to 1,550,942 Atu1562 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -1 0 1at 1547.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,547,078 - -0.3

Or see this region's nucleotide sequence